RL133_ARATH
ID RL133_ARATH Reviewed; 206 AA.
AC Q9FF90;
DT 27-JUN-2006, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 25-MAY-2022, entry version 119.
DE RecName: Full=60S ribosomal protein L13-3;
GN Name=RPL13D; OrderedLocusNames=At5g23900; ORFNames=MRO11.6;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9330910; DOI=10.1093/dnares/4.3.215;
RA Sato S., Kotani H., Nakamura Y., Kaneko T., Asamizu E., Fukami M.,
RA Miyajima N., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. I. Sequence
RT features of the 1.6 Mb regions covered by twenty physically assigned P1
RT clones.";
RL DNA Res. 4:215-230(1997).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY ORGANIZATION, AND NOMENCLATURE.
RX PubMed=11598216; DOI=10.1104/pp.010265;
RA Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R.,
RA Delseny M., Bailey-Serres J.;
RT "The organization of cytoplasmic ribosomal protein genes in the Arabidopsis
RT genome.";
RL Plant Physiol. 127:398-415(2001).
RN [5]
RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX PubMed=19376835; DOI=10.1104/pp.109.138677;
RA Reiland S., Messerli G., Baerenfaller K., Gerrits B., Endler A.,
RA Grossmann J., Gruissem W., Baginsky S.;
RT "Large-scale Arabidopsis phosphoproteome profiling reveals novel
RT chloroplast kinase substrates and phosphorylation networks.";
RL Plant Physiol. 150:889-903(2009).
CC -!- SIMILARITY: Belongs to the eukaryotic ribosomal protein eL13 family.
CC {ECO:0000305}.
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DR EMBL; AB005244; BAB10063.1; -; Genomic_DNA.
DR EMBL; CP002688; AED93230.1; -; Genomic_DNA.
DR EMBL; AF378895; AAK55698.1; -; mRNA.
DR EMBL; AY052746; AAK96460.1; -; mRNA.
DR RefSeq; NP_197778.1; NM_122295.4.
DR AlphaFoldDB; Q9FF90; -.
DR SMR; Q9FF90; -.
DR BioGRID; 17730; 130.
DR STRING; 3702.AT5G23900.1; -.
DR iPTMnet; Q9FF90; -.
DR PaxDb; Q9FF90; -.
DR PRIDE; Q9FF90; -.
DR ProteomicsDB; 226323; -.
DR EnsemblPlants; AT5G23900.1; AT5G23900.1; AT5G23900.
DR GeneID; 832455; -.
DR Gramene; AT5G23900.1; AT5G23900.1; AT5G23900.
DR KEGG; ath:AT5G23900; -.
DR Araport; AT5G23900; -.
DR TAIR; locus:2172863; AT5G23900.
DR eggNOG; KOG3295; Eukaryota.
DR HOGENOM; CLU_075696_1_0_1; -.
DR InParanoid; Q9FF90; -.
DR OMA; SERYKSK; -.
DR OrthoDB; 1239434at2759; -.
DR PhylomeDB; Q9FF90; -.
DR PRO; PR:Q9FF90; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FF90; baseline and differential.
DR Genevisible; Q9FF90; AT.
DR GO; GO:0022625; C:cytosolic large ribosomal subunit; HDA:TAIR.
DR GO; GO:0022626; C:cytosolic ribosome; HDA:TAIR.
DR GO; GO:0009536; C:plastid; HDA:TAIR.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0003735; F:structural constituent of ribosome; IDA:CAFA.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR HAMAP; MF_00499; Ribosomal_L13e; 1.
DR InterPro; IPR001380; Ribosomal_L13e.
DR InterPro; IPR018256; Ribosomal_L13e_CS.
DR PANTHER; PTHR11722; PTHR11722; 1.
DR Pfam; PF01294; Ribosomal_L13e; 1.
DR PROSITE; PS01104; RIBOSOMAL_L13E; 1.
PE 1: Evidence at protein level;
KW Reference proteome; Ribonucleoprotein; Ribosomal protein.
FT CHAIN 1..206
FT /note="60S ribosomal protein L13-3"
FT /id="PRO_0000240515"
FT REGION 186..206
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 206 AA; 23485 MW; E29C7C6C3E9C35D2 CRC64;
MKHNNVIPSS HFRKHWQNYV KTWFNQPARK TRRRVARQKK AVKIFPRPTS GPLRPVVHGQ
TLKYNMKVRA GKGFTLEELK VAGIPKKLAP TIGISVDHRR KNRSLEGLQS NVQRLKTYKA
KLVVFPRRSR QVKAGDSTPE ELANATQVQG DYMPIASVKA AMELVKLTAD LKAFKAYDKI
RLERTNARHA GARAKRAAEA EKEEKK
