RL13_MYCS2
ID RL13_MYCS2 Reviewed; 147 AA.
AC A0QSP8; I7FYE6;
DT 15-JAN-2008, integrated into UniProtKB/Swiss-Prot.
DT 09-JAN-2007, sequence version 1.
DT 25-MAY-2022, entry version 98.
DE RecName: Full=50S ribosomal protein L13 {ECO:0000255|HAMAP-Rule:MF_01366};
GN Name=rplM {ECO:0000255|HAMAP-Rule:MF_01366};
GN OrderedLocusNames=MSMEG_1556, MSMEI_1519;
OS Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium
OS smegmatis).
OC Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae;
OC Mycolicibacterium.
OX NCBI_TaxID=246196;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 700084 / mc(2)155;
RA Fleischmann R.D., Dodson R.J., Haft D.H., Merkel J.S., Nelson W.C.,
RA Fraser C.M.;
RL Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 700084 / mc(2)155;
RX PubMed=17295914; DOI=10.1186/gb-2007-8-2-r20;
RA Deshayes C., Perrodou E., Gallien S., Euphrasie D., Schaeffer C.,
RA Van-Dorsselaer A., Poch O., Lecompte O., Reyrat J.-M.;
RT "Interrupted coding sequences in Mycobacterium smegmatis: authentic
RT mutations or sequencing errors?";
RL Genome Biol. 8:R20.1-R20.9(2007).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], IDENTIFICATION BY MASS
RP SPECTROMETRY [LARGE SCALE ANALYSIS], AND CLEAVAGE OF INITIATOR METHIONINE.
RC STRAIN=ATCC 700084 / mc(2)155;
RX PubMed=18955433; DOI=10.1101/gr.081901.108;
RA Gallien S., Perrodou E., Carapito C., Deshayes C., Reyrat J.-M.,
RA Van Dorsselaer A., Poch O., Schaeffer C., Lecompte O.;
RT "Ortho-proteogenomics: multiple proteomes investigation through orthology
RT and a new MS-based protocol.";
RL Genome Res. 19:128-135(2009).
CC -!- FUNCTION: This protein is one of the early assembly proteins of the 50S
CC ribosomal subunit, although it is not seen to bind rRNA by itself. It
CC is important during the early stages of 50S assembly.
CC {ECO:0000255|HAMAP-Rule:MF_01366}.
CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000255|HAMAP-
CC Rule:MF_01366}.
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uL13 family.
CC {ECO:0000255|HAMAP-Rule:MF_01366}.
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DR EMBL; CP000480; ABK73633.1; -; Genomic_DNA.
DR EMBL; CP001663; AFP37992.1; -; Genomic_DNA.
DR RefSeq; WP_003892944.1; NZ_SIJM01000016.1.
DR RefSeq; YP_885936.1; NC_008596.1.
DR PDB; 5O60; EM; 3.20 A; K=1-147.
DR PDB; 5O61; EM; 3.31 A; K=1-147.
DR PDB; 5XYM; EM; 3.08 A; J=1-147.
DR PDB; 5ZEB; EM; 3.40 A; K=1-147.
DR PDB; 5ZEP; EM; 3.40 A; K=1-147.
DR PDB; 5ZET; EM; 3.20 A; K=1-147.
DR PDB; 6DZI; EM; 3.46 A; K=2-147.
DR PDB; 6DZP; EM; 3.42 A; K=2-147.
DR PDBsum; 5O60; -.
DR PDBsum; 5O61; -.
DR PDBsum; 5XYM; -.
DR PDBsum; 5ZEB; -.
DR PDBsum; 5ZEP; -.
DR PDBsum; 5ZET; -.
DR PDBsum; 6DZI; -.
DR PDBsum; 6DZP; -.
DR AlphaFoldDB; A0QSP8; -.
DR SMR; A0QSP8; -.
DR IntAct; A0QSP8; 3.
DR STRING; 246196.MSMEI_1519; -.
DR PRIDE; A0QSP8; -.
DR EnsemblBacteria; ABK73633; ABK73633; MSMEG_1556.
DR EnsemblBacteria; AFP37992; AFP37992; MSMEI_1519.
DR GeneID; 66733011; -.
DR KEGG; msg:MSMEI_1519; -.
DR KEGG; msm:MSMEG_1556; -.
DR PATRIC; fig|246196.19.peg.1542; -.
DR eggNOG; COG0102; Bacteria.
DR OMA; DFVVIIN; -.
DR OrthoDB; 1822215at2; -.
DR Proteomes; UP000000757; Chromosome.
DR Proteomes; UP000006158; Chromosome.
DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0006412; P:translation; IEA:UniProtKB-UniRule.
DR CDD; cd00392; Ribosomal_L13; 1.
DR Gene3D; 3.90.1180.10; -; 1.
DR HAMAP; MF_01366; Ribosomal_L13; 1.
DR InterPro; IPR005822; Ribosomal_L13.
DR InterPro; IPR005823; Ribosomal_L13_bac-type.
DR InterPro; IPR036899; Ribosomal_L13_sf.
DR PANTHER; PTHR11545; PTHR11545; 1.
DR Pfam; PF00572; Ribosomal_L13; 1.
DR PIRSF; PIRSF002181; Ribosomal_L13; 1.
DR SUPFAM; SSF52161; SSF52161; 1.
DR TIGRFAMs; TIGR01066; rplM_bact; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Reference proteome; Ribonucleoprotein; Ribosomal protein.
FT INIT_MET 1
FT /note="Removed"
FT /evidence="ECO:0000269|PubMed:18955433"
FT CHAIN 2..147
FT /note="50S ribosomal protein L13"
FT /id="PRO_1000055416"
FT TURN 8..10
FT /evidence="ECO:0007829|PDB:5ZET"
FT STRAND 15..19
FT /evidence="ECO:0007829|PDB:5XYM"
FT HELIX 27..37
FT /evidence="ECO:0007829|PDB:5XYM"
FT STRAND 40..43
FT /evidence="ECO:0007829|PDB:5XYM"
FT STRAND 46..48
FT /evidence="ECO:0007829|PDB:5XYM"
FT STRAND 53..57
FT /evidence="ECO:0007829|PDB:5XYM"
FT TURN 59..61
FT /evidence="ECO:0007829|PDB:5XYM"
FT HELIX 68..71
FT /evidence="ECO:0007829|PDB:5XYM"
FT STRAND 75..77
FT /evidence="ECO:0007829|PDB:5XYM"
FT STRAND 84..86
FT /evidence="ECO:0007829|PDB:5XYM"
FT HELIX 89..95
FT /evidence="ECO:0007829|PDB:5XYM"
FT HELIX 97..108
FT /evidence="ECO:0007829|PDB:5XYM"
FT HELIX 113..117
FT /evidence="ECO:0007829|PDB:5XYM"
FT TURN 119..121
FT /evidence="ECO:0007829|PDB:5XYM"
FT STRAND 122..124
FT /evidence="ECO:0007829|PDB:5XYM"
FT STRAND 126..128
FT /evidence="ECO:0007829|PDB:5XYM"
FT HELIX 131..135
FT /evidence="ECO:0007829|PDB:5O60"
SQ SEQUENCE 147 AA; 16119 MW; BBE4AC000F9925B4 CRC64;
MPTYTPKAGD TTRSWYVIDA SDVVLGRLAS AAATLLRGKH KPTFTPNVDG GDFVIVINAD
KIAVSGDKLT KKFAYRHSGY PGGLRKRTIG ELLEKHPTRV VENAIIGMLP HNKLGRQIQK
KLKVYAGPDH PHAAQQPIPF EIKQVAQ
