ID   RL13_PYRHO              Reviewed;         142 AA.
AC   O59300;
DT   15-DEC-1998, integrated into UniProtKB/Swiss-Prot.
DT   01-AUG-1998, sequence version 1.
DT   03-AUG-2022, entry version 129.
DE   RecName: Full=50S ribosomal protein L13 {ECO:0000255|HAMAP-Rule:MF_01366};
GN   Name=rpl13 {ECO:0000255|HAMAP-Rule:MF_01366}; OrderedLocusNames=PH1634;
OS   Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC
OS   100139 / OT-3).
OC   Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae;
OC   Pyrococcus.
OX   NCBI_TaxID=70601;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3;
RX   PubMed=9679194; DOI=10.1093/dnares/5.2.55;
RA   Kawarabayasi Y., Sawada M., Horikawa H., Haikawa Y., Hino Y., Yamamoto S.,
RA   Sekine M., Baba S., Kosugi H., Hosoyama A., Nagai Y., Sakai M., Ogura K.,
RA   Otsuka R., Nakazawa H., Takamiya M., Ohfuku Y., Funahashi T., Tanaka T.,
RA   Kudoh Y., Yamazaki J., Kushida N., Oguchi A., Aoki K., Yoshizawa T.,
RA   Nakamura Y., Robb F.T., Horikoshi K., Masuchi Y., Shizuya H., Kikuchi H.;
RT   "Complete sequence and gene organization of the genome of a hyper-
RT   thermophilic archaebacterium, Pyrococcus horikoshii OT3.";
RL   DNA Res. 5:55-76(1998).
RN   [2]
RP   X-RAY CRYSTALLOGRAPHY (1.6 ANGSTROMS).
RA   Nakashima T., Tanaka M., Kazama T., Kawamura S., Kimura M., Yao M.,
RA   Tanaka I.;
RT   "Crystal structure of ribosomal protein L13 from hyperthermophilic archaeon
RT   Pyrococcus horikoshii.";
RL   Submitted (FEB-2003) to the PDB data bank.
CC   -!- FUNCTION: This protein is one of the early assembly proteins of the 50S
CC       ribosomal subunit, although it is not seen to bind rRNA by itself. It
CC       is important during the early stages of 50S assembly.
CC       {ECO:0000255|HAMAP-Rule:MF_01366}.
CC   -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000255|HAMAP-
CC       Rule:MF_01366}.
CC   -!- SIMILARITY: Belongs to the universal ribosomal protein uL13 family.
CC       {ECO:0000255|HAMAP-Rule:MF_01366}.
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DR   EMBL; BA000001; BAA30746.1; -; Genomic_DNA.
DR   PIR; B71043; B71043.
DR   RefSeq; WP_010885705.1; NC_000961.1.
DR   PDB; 1J3A; X-ray; 1.60 A; A=1-142.
DR   PDBsum; 1J3A; -.
DR   AlphaFoldDB; O59300; -.
DR   SMR; O59300; -.
DR   STRING; 70601.3258063; -.
DR   PRIDE; O59300; -.
DR   EnsemblBacteria; BAA30746; BAA30746; BAA30746.
DR   GeneID; 1442485; -.
DR   KEGG; pho:PH1634; -.
DR   eggNOG; arCOG04242; Archaea.
DR   OMA; GMLPWKT; -.
DR   OrthoDB; 87367at2157; -.
DR   EvolutionaryTrace; O59300; -.
DR   Proteomes; UP000000752; Chromosome.
DR   GO; GO:0015934; C:large ribosomal subunit; IEA:InterPro.
DR   GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR   GO; GO:0006412; P:translation; IEA:UniProtKB-UniRule.
DR   CDD; cd00392; Ribosomal_L13; 1.
DR   Gene3D; 3.90.1180.10; -; 1.
DR   HAMAP; MF_01366; Ribosomal_L13; 1.
DR   InterPro; IPR005822; Ribosomal_L13.
DR   InterPro; IPR023563; Ribosomal_L13_CS.
DR   InterPro; IPR005755; Ribosomal_L13_euk/arc.
DR   InterPro; IPR036899; Ribosomal_L13_sf.
DR   PANTHER; PTHR11545; PTHR11545; 1.
DR   PANTHER; PTHR11545:SF3; PTHR11545:SF3; 1.
DR   Pfam; PF00572; Ribosomal_L13; 1.
DR   PIRSF; PIRSF002181; Ribosomal_L13; 1.
DR   SUPFAM; SSF52161; SSF52161; 1.
DR   TIGRFAMs; TIGR01077; L13_A_E; 1.
DR   PROSITE; PS00783; RIBOSOMAL_L13; 1.
PE   1: Evidence at protein level;
KW   3D-structure; Ribonucleoprotein; Ribosomal protein.
FT   CHAIN           1..142
FT                   /note="50S ribosomal protein L13"
FT                   /id="PRO_0000133763"
FT   STRAND          2..5
FT                   /evidence="ECO:0007829|PDB:1J3A"
FT   HELIX           11..23
FT                   /evidence="ECO:0007829|PDB:1J3A"
FT   STRAND          28..31
FT                   /evidence="ECO:0007829|PDB:1J3A"
FT   HELIX           33..35
FT                   /evidence="ECO:0007829|PDB:1J3A"
FT   STRAND          37..40
FT                   /evidence="ECO:0007829|PDB:1J3A"
FT   HELIX           42..52
FT                   /evidence="ECO:0007829|PDB:1J3A"
FT   HELIX           71..80
FT                   /evidence="ECO:0007829|PDB:1J3A"
FT   TURN            81..86
FT                   /evidence="ECO:0007829|PDB:1J3A"
FT   HELIX           88..94
FT                   /evidence="ECO:0007829|PDB:1J3A"
FT   STRAND          97..99
FT                   /evidence="ECO:0007829|PDB:1J3A"
FT   HELIX           105..107
FT                   /evidence="ECO:0007829|PDB:1J3A"
FT   HELIX           116..118
FT                   /evidence="ECO:0007829|PDB:1J3A"
FT   HELIX           120..122
FT                   /evidence="ECO:0007829|PDB:1J3A"
FT   STRAND          123..125
FT                   /evidence="ECO:0007829|PDB:1J3A"
FT   STRAND          128..130
FT                   /evidence="ECO:0007829|PDB:1J3A"
FT   HELIX           131..138
FT                   /evidence="ECO:0007829|PDB:1J3A"
SQ   SEQUENCE   142 AA;  16298 MW;  08AEE7B91507E21B CRC64;
     MRIINADGLI LGRLASRVAK MLLEGEEVVI VNAEKAVITG NREVIFSKYK QRTGLRTLTN
     PRRGPFYPKR SDEIVRRTIR GMLPWKTDRG RKAFRRLKVY VGIPKEFQDK QLETIVEAHV
     SRLSRPKYVT VGEVAKFLGG KF