ATPD_YARLI
ID ATPD_YARLI Reviewed; 162 AA.
AC Q6C877;
DT 10-OCT-2018, integrated into UniProtKB/Swiss-Prot.
DT 10-OCT-2018, sequence version 2.
DT 03-AUG-2022, entry version 110.
DE RecName: Full=ATP synthase subunit delta, mitochondrial {ECO:0000250|UniProtKB:Q12165};
DE AltName: Full=F-ATPase delta subunit {ECO:0000250|UniProtKB:Q12165};
DE Flags: Precursor;
GN Name=ATP16 {ECO:0000250|UniProtKB:Q12165};
GN OrderedLocusNames=YALI0_D22022g {ECO:0000312|EMBL:CAG81333.1};
OS Yarrowia lipolytica (strain CLIB 122 / E 150) (Yeast) (Candida lipolytica).
OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes;
OC Saccharomycetales; Dipodascaceae; Yarrowia.
OX NCBI_TaxID=284591 {ECO:0000312|Proteomes:UP000001300};
RN [1] {ECO:0000305}
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], PROTEIN SEQUENCE OF 25-34,
RP IDENTIFICATION IN ATP SYNTHASE COMPLEX, FUNCTION OF ATP SYNTHASE COMPLEX,
RP SUBUNIT, SUBCELLULAR LOCATION, MASS SPECTROMETRY, AND IDENTIFICATION BY
RP MASS SPECTROMETRY.
RC STRAIN=CLIB 122 / E 150 {ECO:0000303|PubMed:25759169};
RX PubMed=25759169; DOI=10.1042/bj20150197;
RA Liu S., Charlesworth T.J., Bason J.V., Montgomery M.G., Harbour M.E.,
RA Fearnley I.M., Walker J.E.;
RT "The purification and characterization of ATP synthase complexes from the
RT mitochondria of four fungal species.";
RL Biochem. J. 468:167-175(2015).
RN [2] {ECO:0000312|Proteomes:UP000001300}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CLIB 122 / E 150;
RX PubMed=15229592; DOI=10.1038/nature02579;
RA Dujon B., Sherman D., Fischer G., Durrens P., Casaregola S., Lafontaine I.,
RA de Montigny J., Marck C., Neuveglise C., Talla E., Goffard N., Frangeul L.,
RA Aigle M., Anthouard V., Babour A., Barbe V., Barnay S., Blanchin S.,
RA Beckerich J.-M., Beyne E., Bleykasten C., Boisrame A., Boyer J.,
RA Cattolico L., Confanioleri F., de Daruvar A., Despons L., Fabre E.,
RA Fairhead C., Ferry-Dumazet H., Groppi A., Hantraye F., Hennequin C.,
RA Jauniaux N., Joyet P., Kachouri R., Kerrest A., Koszul R., Lemaire M.,
RA Lesur I., Ma L., Muller H., Nicaud J.-M., Nikolski M., Oztas S.,
RA Ozier-Kalogeropoulos O., Pellenz S., Potier S., Richard G.-F.,
RA Straub M.-L., Suleau A., Swennen D., Tekaia F., Wesolowski-Louvel M.,
RA Westhof E., Wirth B., Zeniou-Meyer M., Zivanovic Y., Bolotin-Fukuhara M.,
RA Thierry A., Bouchier C., Caudron B., Scarpelli C., Gaillardin C.,
RA Weissenbach J., Wincker P., Souciet J.-L.;
RT "Genome evolution in yeasts.";
RL Nature 430:35-44(2004).
RN [3] {ECO:0000305}
RP X-RAY CRYSTALLOGRAPHY (3.5 ANGSTROMS) OF ATP SYNTHASE F1C10 COMPLEX,
RP STRUCTURE BY ELECTRON MICROSCOPY (7.7 ANGSTROMS) OF DIMERIC ATP SYNTHASE
RP COMPLEX, FUNCTION, SUBUNIT, AND SUBCELLULAR LOCATION.
RX PubMed=27373333; DOI=10.1016/j.molcel.2016.05.037;
RA Hahn A., Parey K., Bublitz M., Mills D.J., Zickermann V., Vonck J.,
RA Kuehlbrandt W., Meier T.;
RT "Structure of a Complete ATP Synthase Dimer Reveals the Molecular Basis of
RT Inner Mitochondrial Membrane Morphology.";
RL Mol. Cell 63:445-456(2016).
CC -!- FUNCTION: Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or
CC Complex V) produces ATP from ADP in the presence of a proton gradient
CC across the membrane which is generated by electron transport complexes
CC of the respiratory chain (PubMed:25759169). F-type ATP synthases
CC consist of two structural domains, F(1) - containing the
CC extramembraneous catalytic core, and F(0) - containing the membrane
CC proton channel, linked together by a central stalk and a peripheral
CC stalk (PubMed:27373333). During catalysis, ATP synthesis in the
CC catalytic domain of F(1) is coupled via a rotary mechanism of the
CC central stalk subunits to proton translocation (PubMed:27373333). Part
CC of the complex F(1) domain and the central stalk which is part of the
CC complex rotary element (PubMed:27373333). Rotation of the central stalk
CC against the surrounding alpha/ATP1(3)beta/ATP2(3) subunits leads to
CC hydrolysis of ATP in three separate catalytic sites on the beta/ATP2
CC subunits (PubMed:27373333). {ECO:0000269|PubMed:25759169,
CC ECO:0000269|PubMed:27373333}.
CC -!- SUBUNIT: F-type ATP synthases have 2 components, the catalytic core
CC F(1) and the membrane-embedded component F(0), linked together by a
CC central stalk and a peripheral stalk (PubMed:27373333). The central
CC stalk, also called rotor shaft, is often seen as part of F(1)
CC (PubMed:27373333). The peripheral stalk is seen as part of F(0)
CC (PubMed:27373333). F(0) contains the membrane channel next to the rotor
CC (PubMed:27373333). F-type ATP synthases form dimers but each monomer
CC functions independently in ATP generation (PubMed:27373333). The dimer
CC consists of 17 different polypeptides: ATP1 (subunit alpha, 3 molecules
CC per monomer, part of F(1)), ATP2 (subunit beta, 3 copies per monomer,
CC part of F(1)), ATP3 (subunit gamma, part of the central stalk), ATP4
CC (subunit b, part of the peripheral stalk), ATP5/OSCP (subunit 5/OSCP,
CC part of the peripheral stalk), ATP6 (subunit a, part of the peripheral
CC stalk), ATP7 (subunit d, part of the peripheral stalk), ATP8 (subunit
CC 8, part of the peripheral stalk), OLI1 (subunit c, part of the rotor,
CC 10 molecules per monomer), ATP14 (subunit h, part of the peripheral
CC stalk), ATP15 (subunit epsilon, part of the central stalk), ATP16
CC (subunit delta, part of the central stalk), ATP17 (subunit f, part of
CC the peripheral stalk), ATP18 (subunit i/j, part of the peripheral
CC stalk), ATP19 (subunit k, dimer-specific, at interface between
CC monomers), ATP20 (subunit g, at interface between monomers), TIM11
CC (subunit e, at interface between monomers) (PubMed:27373333,
CC PubMed:25759169). {ECO:0000269|PubMed:25759169,
CC ECO:0000269|PubMed:27373333}.
CC -!- SUBCELLULAR LOCATION: Mitochondrion inner membrane
CC {ECO:0000305|PubMed:27373333}; Peripheral membrane protein
CC {ECO:0000305|PubMed:27373333}; Matrix side
CC {ECO:0000305|PubMed:27373333}. Note=The F-type ATP synthase complex is
CC anchored in the mitochondrial inner membrane via the F(0) domain with
CC the F(1) domain and the peripheral stalk extending into the
CC mitochondrial matrix. {ECO:0000305|PubMed:27373333}.
CC -!- MASS SPECTROMETRY: Mass=14720.9; Method=MALDI;
CC Evidence={ECO:0000269|PubMed:25759169};
CC -!- SIMILARITY: Belongs to the ATPase epsilon chain family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAG81333.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; CR382130; CAG81333.1; ALT_SEQ; Genomic_DNA.
DR RefSeq; XP_503135.1; XM_503135.1.
DR PDB; 5FL7; X-ray; 3.50 A; H=21-162.
DR PDBsum; 5FL7; -.
DR AlphaFoldDB; Q6C877; -.
DR SMR; Q6C877; -.
DR STRING; 4952.CAG81333; -.
DR EnsemblFungi; CAG81333; CAG81333; YALI0_D22022g.
DR GeneID; 2910195; -.
DR KEGG; yli:YALI0D22022g; -.
DR HOGENOM; CLU_084338_0_1_1; -.
DR InParanoid; Q6C877; -.
DR Proteomes; UP000001300; Chromosome D.
DR GO; GO:0000275; C:mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1); IBA:GO_Central.
DR GO; GO:0046933; F:proton-transporting ATP synthase activity, rotational mechanism; IEA:InterPro.
DR GO; GO:0015986; P:proton motive force-driven ATP synthesis; IBA:GO_Central.
DR CDD; cd12152; F1-ATPase_delta; 1.
DR Gene3D; 2.60.15.10; -; 1.
DR HAMAP; MF_00530; ATP_synth_epsil_bac; 1.
DR InterPro; IPR001469; ATP_synth_F1_dsu/esu.
DR InterPro; IPR020546; ATP_synth_F1_dsu/esu_N.
DR InterPro; IPR036771; ATPsynth_dsu/esu_N.
DR PANTHER; PTHR13822; PTHR13822; 1.
DR Pfam; PF02823; ATP-synt_DE_N; 1.
DR SUPFAM; SSF51344; SSF51344; 1.
DR TIGRFAMs; TIGR01216; ATP_synt_epsi; 1.
PE 1: Evidence at protein level;
KW 3D-structure; ATP synthesis; CF(1); Direct protein sequencing;
KW Hydrogen ion transport; Ion transport; Membrane; Mitochondrion;
KW Mitochondrion inner membrane; Reference proteome; Transit peptide;
KW Transport.
FT TRANSIT 1..24
FT /note="Mitochondrion"
FT /evidence="ECO:0000269|PubMed:25759169"
FT CHAIN 25..162
FT /note="ATP synthase subunit delta, mitochondrial"
FT /evidence="ECO:0000305"
FT /id="PRO_0000445314"
FT STRAND 47..49
FT /evidence="ECO:0007829|PDB:5FL7"
FT STRAND 52..57
FT /evidence="ECO:0007829|PDB:5FL7"
FT STRAND 60..64
FT /evidence="ECO:0007829|PDB:5FL7"
FT STRAND 77..83
FT /evidence="ECO:0007829|PDB:5FL7"
FT HELIX 85..87
FT /evidence="ECO:0007829|PDB:5FL7"
FT STRAND 89..96
FT /evidence="ECO:0007829|PDB:5FL7"
FT TURN 103..105
FT /evidence="ECO:0007829|PDB:5FL7"
FT HELIX 127..137
FT /evidence="ECO:0007829|PDB:5FL7"
FT HELIX 145..152
FT /evidence="ECO:0007829|PDB:5FL7"
FT STRAND 154..156
FT /evidence="ECO:0007829|PDB:5FL7"
SQ SEQUENCE 162 AA; 17349 MW; 946C6F93B65EB119 CRC64;
MFSVARTAIR GAARPAVRIA RRGYAETASV DKLRLTLALP HQSIYNQKEV TQVNIPSTAG
ELGILANHVP TIQQLKPGVV EVIETNGETK SYFISGGFAT VQPDSELSVN SIEAFQAEDF
SPEAIKSLTA EAQKNAQSAD EAVAAEAEIE LEVLEALAHF AK
