RL20_MYCS2
ID RL20_MYCS2 Reviewed; 129 AA.
AC A0QYU6; I7G3M2;
DT 15-JAN-2008, integrated into UniProtKB/Swiss-Prot.
DT 09-JAN-2007, sequence version 1.
DT 25-MAY-2022, entry version 97.
DE RecName: Full=50S ribosomal protein L20 {ECO:0000255|HAMAP-Rule:MF_00382};
GN Name=rplT {ECO:0000255|HAMAP-Rule:MF_00382};
GN OrderedLocusNames=MSMEG_3791, MSMEI_3703;
OS Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium
OS smegmatis).
OC Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae;
OC Mycolicibacterium.
OX NCBI_TaxID=246196;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 700084 / mc(2)155;
RA Fleischmann R.D., Dodson R.J., Haft D.H., Merkel J.S., Nelson W.C.,
RA Fraser C.M.;
RL Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 700084 / mc(2)155;
RX PubMed=17295914; DOI=10.1186/gb-2007-8-2-r20;
RA Deshayes C., Perrodou E., Gallien S., Euphrasie D., Schaeffer C.,
RA Van-Dorsselaer A., Poch O., Lecompte O., Reyrat J.-M.;
RT "Interrupted coding sequences in Mycobacterium smegmatis: authentic
RT mutations or sequencing errors?";
RL Genome Biol. 8:R20.1-R20.9(2007).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], AND IDENTIFICATION BY MASS
RP SPECTROMETRY [LARGE SCALE ANALYSIS].
RC STRAIN=ATCC 700084 / mc(2)155;
RX PubMed=18955433; DOI=10.1101/gr.081901.108;
RA Gallien S., Perrodou E., Carapito C., Deshayes C., Reyrat J.-M.,
RA Van Dorsselaer A., Poch O., Schaeffer C., Lecompte O.;
RT "Ortho-proteogenomics: multiple proteomes investigation through orthology
RT and a new MS-based protocol.";
RL Genome Res. 19:128-135(2009).
CC -!- FUNCTION: Binds directly to 23S ribosomal RNA and is necessary for the
CC in vitro assembly process of the 50S ribosomal subunit. It is not
CC involved in the protein synthesizing functions of that subunit.
CC {ECO:0000255|HAMAP-Rule:MF_00382}.
CC -!- SIMILARITY: Belongs to the bacterial ribosomal protein bL20 family.
CC {ECO:0000255|HAMAP-Rule:MF_00382}.
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DR EMBL; CP000480; ABK72978.1; -; Genomic_DNA.
DR EMBL; CP001663; AFP40162.1; -; Genomic_DNA.
DR RefSeq; WP_003895237.1; NZ_SIJM01000005.1.
DR RefSeq; YP_888084.1; NC_008596.1.
DR PDB; 5O60; EM; 3.20 A; R=1-129.
DR PDB; 5O61; EM; 3.31 A; R=1-129.
DR PDB; 5XYM; EM; 3.08 A; Q=1-129.
DR PDB; 5ZEB; EM; 3.40 A; R=1-129.
DR PDB; 5ZEP; EM; 3.40 A; R=1-129.
DR PDB; 5ZET; EM; 3.20 A; R=1-129.
DR PDB; 6DZI; EM; 3.46 A; R=2-125.
DR PDB; 6DZP; EM; 3.42 A; R=1-129.
DR PDBsum; 5O60; -.
DR PDBsum; 5O61; -.
DR PDBsum; 5XYM; -.
DR PDBsum; 5ZEB; -.
DR PDBsum; 5ZEP; -.
DR PDBsum; 5ZET; -.
DR PDBsum; 6DZI; -.
DR PDBsum; 6DZP; -.
DR AlphaFoldDB; A0QYU6; -.
DR SMR; A0QYU6; -.
DR IntAct; A0QYU6; 3.
DR STRING; 246196.MSMEI_3703; -.
DR PRIDE; A0QYU6; -.
DR EnsemblBacteria; ABK72978; ABK72978; MSMEG_3791.
DR EnsemblBacteria; AFP40162; AFP40162; MSMEI_3703.
DR GeneID; 66735161; -.
DR KEGG; msg:MSMEI_3703; -.
DR KEGG; msm:MSMEG_3791; -.
DR PATRIC; fig|246196.19.peg.3730; -.
DR eggNOG; COG0292; Bacteria.
DR OMA; GRRKNVW; -.
DR OrthoDB; 1932144at2; -.
DR Proteomes; UP000000757; Chromosome.
DR Proteomes; UP000006158; Chromosome.
DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0000027; P:ribosomal large subunit assembly; IEA:UniProtKB-UniRule.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR CDD; cd07026; Ribosomal_L20; 1.
DR Gene3D; 1.10.1900.20; -; 1.
DR HAMAP; MF_00382; Ribosomal_L20; 1.
DR InterPro; IPR005813; Ribosomal_L20.
DR InterPro; IPR035566; Ribosomal_protein_L20_C.
DR PANTHER; PTHR10986; PTHR10986; 1.
DR Pfam; PF00453; Ribosomal_L20; 1.
DR PRINTS; PR00062; RIBOSOMALL20.
DR SUPFAM; SSF74731; SSF74731; 1.
DR TIGRFAMs; TIGR01032; rplT_bact; 1.
DR PROSITE; PS00937; RIBOSOMAL_L20; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Reference proteome; Ribonucleoprotein; Ribosomal protein;
KW RNA-binding; rRNA-binding.
FT CHAIN 1..129
FT /note="50S ribosomal protein L20"
FT /id="PRO_1000049012"
FT HELIX 11..20
FT /evidence="ECO:0007829|PDB:5XYM"
FT TURN 21..23
FT /evidence="ECO:0007829|PDB:5XYM"
FT HELIX 27..30
FT /evidence="ECO:0007829|PDB:5XYM"
FT HELIX 32..71
FT /evidence="ECO:0007829|PDB:5XYM"
FT HELIX 76..86
FT /evidence="ECO:0007829|PDB:5XYM"
FT HELIX 92..101
FT /evidence="ECO:0007829|PDB:5XYM"
FT HELIX 106..115
FT /evidence="ECO:0007829|PDB:5XYM"
SQ SEQUENCE 129 AA; 14465 MW; 20CC470CE46DE29F CRC64;
MARVKRALNA QKKRRTVLKA SKGYRGQRSR LYRKAKEQQL HSLTYAYRDR RARKGEFRKL
WISRINAAAR ANDITYNRLI QGLKAAGVEV DRKNLAELAV SDPAAFTALV DVARAALPED
VNAPSGEAA