RL211_ARATH
ID RL211_ARATH Reviewed; 164 AA.
AC Q43291;
DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot.
DT 15-JUL-1998, sequence version 2.
DT 25-MAY-2022, entry version 137.
DE RecName: Full=60S ribosomal protein L21-1;
GN Name=RPL21A; OrderedLocusNames=At1g09590; ORFNames=F14J9.25;
GN and
GN Name=RPL21C; OrderedLocusNames=At1g09690; ORFNames=F21M12.8;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (AT1G09590 AND AT1G09690).
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (AT1G09590 AND AT1G09690).
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY ORGANIZATION, AND NOMENCLATURE.
RX PubMed=11598216; DOI=10.1104/pp.010265;
RA Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R.,
RA Delseny M., Bailey-Serres J.;
RT "The organization of cytoplasmic ribosomal protein genes in the Arabidopsis
RT genome.";
RL Plant Physiol. 127:398-415(2001).
CC -!- SIMILARITY: Belongs to the eukaryotic ribosomal protein eL21 family.
CC {ECO:0000305}.
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DR EMBL; AC003970; AAC33220.1; -; Genomic_DNA.
DR EMBL; AC000132; AAB60725.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE28466.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE28480.1; -; Genomic_DNA.
DR EMBL; AF370227; AAK44042.1; -; mRNA.
DR EMBL; AY059119; AAL15225.1; -; mRNA.
DR EMBL; BT000775; AAN31914.1; -; mRNA.
DR EMBL; AY059923; AAL24405.1; -; mRNA.
DR EMBL; AY081656; AAM10218.1; -; mRNA.
DR PIR; G86230; G86230.
DR RefSeq; NP_563847.1; NM_100831.4.
DR RefSeq; NP_563849.1; NM_100841.4.
DR AlphaFoldDB; Q43291; -.
DR SMR; Q43291; -.
DR BioGRID; 22727; 157.
DR BioGRID; 22738; 153.
DR STRING; 3702.AT1G09590.1; -.
DR PaxDb; Q43291; -.
DR PRIDE; Q43291; -.
DR EnsemblPlants; AT1G09590.1; AT1G09590.1; AT1G09590.
DR EnsemblPlants; AT1G09690.1; AT1G09690.1; AT1G09690.
DR GeneID; 837486; -.
DR GeneID; 837497; -.
DR Gramene; AT1G09590.1; AT1G09590.1; AT1G09590.
DR Gramene; AT1G09690.1; AT1G09690.1; AT1G09690.
DR KEGG; ath:AT1G09590; -.
DR KEGG; ath:AT1G09690; -.
DR Araport; AT1G09590; -.
DR Araport; AT1G09690; -.
DR TAIR; locus:2012275; AT1G09590.
DR TAIR; locus:2024387; AT1G09690.
DR eggNOG; KOG1732; Eukaryota.
DR HOGENOM; CLU_103610_0_1_1; -.
DR InParanoid; Q43291; -.
DR OMA; VAYDTHI; -.
DR OrthoDB; 1455026at2759; -.
DR PhylomeDB; Q43291; -.
DR PRO; PR:Q43291; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q43291; baseline and differential.
DR Genevisible; Q43291; AT.
DR GO; GO:0022625; C:cytosolic large ribosomal subunit; HDA:TAIR.
DR GO; GO:0022626; C:cytosolic ribosome; HDA:TAIR.
DR GO; GO:0005576; C:extracellular region; HDA:TAIR.
DR GO; GO:0005730; C:nucleolus; HDA:TAIR.
DR GO; GO:0003735; F:structural constituent of ribosome; IDA:CAFA.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR Gene3D; 2.30.30.70; -; 1.
DR InterPro; IPR036948; Ribosomal_L21_sf.
DR InterPro; IPR001147; Ribosomal_L21e.
DR InterPro; IPR018259; Ribosomal_L21e_CS.
DR InterPro; IPR008991; Translation_prot_SH3-like_sf.
DR PANTHER; PTHR20981; PTHR20981; 1.
DR Pfam; PF01157; Ribosomal_L21e; 1.
DR SUPFAM; SSF50104; SSF50104; 1.
DR PROSITE; PS01171; RIBOSOMAL_L21E; 1.
PE 2: Evidence at transcript level;
KW Reference proteome; Ribonucleoprotein; Ribosomal protein.
FT CHAIN 1..164
FT /note="60S ribosomal protein L21-1"
FT /id="PRO_0000149677"
SQ SEQUENCE 164 AA; 18653 MW; E4E69EF5F65590A1 CRC64;
MPAGHGVRAR TRDLFARPFR KKGYIPLSTY LRTFKVGDYV DVKVNGAIHK GMPHKFYHGR
TGRIWNVTKR AVGVEVNKQI GNRIIRKRIH VRVEHVQQSR CAEEFKLRKK KNDELKAAAK
ANGETISTKR QPKGPKPGFM VEGMTLETVT PIPYDVVNDL KGGY