ATPE_ORYSJ
ID ATPE_ORYSJ Reviewed; 137 AA.
AC P0C2Z3; P12086; Q6QY05; Q6QY69;
DT 29-MAY-2007, integrated into UniProtKB/Swiss-Prot.
DT 29-MAY-2007, sequence version 1.
DT 03-AUG-2022, entry version 88.
DE RecName: Full=ATP synthase epsilon chain, chloroplastic {ECO:0000255|HAMAP-Rule:MF_00530};
DE AltName: Full=ATP synthase F1 sector epsilon subunit {ECO:0000255|HAMAP-Rule:MF_00530};
DE AltName: Full=F-ATPase epsilon subunit {ECO:0000255|HAMAP-Rule:MF_00530};
GN Name=atpE {ECO:0000255|HAMAP-Rule:MF_00530}; ORFNames=Nip060;
OS Oryza sativa subsp. japonica (Rice).
OG Plastid; Chloroplast.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RX PubMed=2954029; DOI=10.1093/nar/15.10.4358;
RA Moon E., Kao T.-H., Wu R.;
RT "Sequence of the chloroplast-encoded atpB-atpE-trnM gene clusters from
RT rice.";
RL Nucleic Acids Res. 15:4358-4359(1987).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RX PubMed=2534354; DOI=10.1266/jjg.64.223;
RA Nishizawa Y., Hirai A.;
RT "The nucleotide sequences and expression of genes for the beta and epsilon
RT subunits of ATP synthase from rice (Oryza sativa L.).";
RL Jpn. J. Genet. 64:223-229(1989).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=2770692; DOI=10.1007/bf02464880;
RA Hiratsuka J., Shimada H., Whittier R., Ishibashi T., Sakamoto M., Mori M.,
RA Kondo C., Honji Y., Sun C.-R., Meng B.-Y., Li Y.-Q., Kanno A.,
RA Nishizawa Y., Hirai A., Shinozaki K., Sugiura M.;
RT "The complete sequence of the rice (Oryza sativa) chloroplast genome:
RT intermolecular recombination between distinct tRNA genes accounts for a
RT major plastid DNA inversion during the evolution of the cereals.";
RL Mol. Gen. Genet. 217:185-194(1989).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15122023; DOI=10.1104/pp.103.031245;
RA Tang J., Xia H., Cao M., Zhang X., Zeng W., Hu S., Tong W., Wang J.,
RA Wang J., Yu J., Yang H., Zhu L.;
RT "A comparison of rice chloroplast genomes.";
RL Plant Physiol. 135:412-420(2004).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (OS01G0790900).
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (OS06G0120500).
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [7]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
CC -!- FUNCTION: Produces ATP from ADP in the presence of a proton gradient
CC across the membrane. {ECO:0000255|HAMAP-Rule:MF_00530}.
CC -!- SUBUNIT: F-type ATPases have 2 components, CF(1) - the catalytic core
CC - and CF(0) - the membrane proton channel. CF(1) has five subunits:
CC alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has three main
CC subunits: a, b and c. {ECO:0000255|HAMAP-Rule:MF_00530}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast thylakoid membrane
CC {ECO:0000255|HAMAP-Rule:MF_00530}; Peripheral membrane protein
CC {ECO:0000255|HAMAP-Rule:MF_00530}.
CC -!- MISCELLANEOUS: A stretch of the chloroplast genome is duplicated within
CC chromosomes 1 and 6, resulting in the duplication of the gene. The
CC expression of these duplicated genes (Os01g0790900 and Os06g0120500
CC respectively) has not been demonstrated.
CC -!- SIMILARITY: Belongs to the ATPase epsilon chain family.
CC {ECO:0000255|HAMAP-Rule:MF_00530}.
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DR EMBL; M31464; AAA84589.1; -; Genomic_DNA.
DR EMBL; D00432; BAA00335.1; -; Genomic_DNA.
DR EMBL; X15901; CAA34002.1; -; Genomic_DNA.
DR EMBL; AY522330; AAS46126.1; -; Genomic_DNA.
DR EMBL; AP003280; BAD81970.1; -; Genomic_DNA.
DR EMBL; AP003457; BAD68381.1; -; Genomic_DNA.
DR PIR; JQ0229; PWRZE.
DR RefSeq; NP_039389.1; NC_001320.1.
DR RefSeq; YP_009305310.1; NC_031333.1.
DR AlphaFoldDB; P0C2Z3; -.
DR SMR; P0C2Z3; -.
DR BioGRID; 792829; 1.
DR STRING; 39947.P0C2Z3; -.
DR PaxDb; P0C2Z3; -.
DR PRIDE; P0C2Z3; -.
DR GeneID; 29141376; -.
DR GeneID; 3131461; -.
DR KEGG; osa:3131461; -.
DR InParanoid; P0C2Z3; -.
DR OrthoDB; 1438051at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000059680; Chloroplast.
DR GO; GO:0009535; C:chloroplast thylakoid membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0000275; C:mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1); IBA:GO_Central.
DR GO; GO:0009536; C:plastid; IC:Gramene.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
DR GO; GO:0046933; F:proton-transporting ATP synthase activity, rotational mechanism; IEA:UniProtKB-UniRule.
DR GO; GO:0015986; P:proton motive force-driven ATP synthesis; IBA:GO_Central.
DR CDD; cd12152; F1-ATPase_delta; 1.
DR Gene3D; 2.60.15.10; -; 1.
DR HAMAP; MF_00530; ATP_synth_epsil_bac; 1.
DR InterPro; IPR001469; ATP_synth_F1_dsu/esu.
DR InterPro; IPR020547; ATP_synth_F1_dsu/esu_C.
DR InterPro; IPR020546; ATP_synth_F1_dsu/esu_N.
DR InterPro; IPR036771; ATPsynth_dsu/esu_N.
DR PANTHER; PTHR13822; PTHR13822; 1.
DR Pfam; PF00401; ATP-synt_DE; 1.
DR Pfam; PF02823; ATP-synt_DE_N; 1.
DR SUPFAM; SSF51344; SSF51344; 1.
DR TIGRFAMs; TIGR01216; ATP_synt_epsi; 1.
PE 3: Inferred from homology;
KW ATP synthesis; CF(1); Chloroplast; Hydrogen ion transport; Ion transport;
KW Membrane; Plastid; Reference proteome; Thylakoid; Transport.
FT CHAIN 1..137
FT /note="ATP synthase epsilon chain, chloroplastic"
FT /id="PRO_0000288519"
FT CONFLICT 16
FT /note="D -> A (in Ref. 2; BAA00335)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 137 AA; 15218 MW; 1B258446356778E0 CRC64;
MKLNLYVLTP KRIIWDCEVK EIILSTNSGQ IGVLPNHAPI NTAVDMGPLR IRLLNDQWLT
AVLWSGFARI VNNEIIILGN DAELGSDIDP EEAQQALEIA EANVSRAEGT KELVEAKVAL
RRARIRVEAV NWIPPSN
