RL241_ARATH
ID RL241_ARATH Reviewed; 164 AA.
AC Q42347; Q9LF73; Q9SKP1;
DT 27-JUN-2006, integrated into UniProtKB/Swiss-Prot.
DT 27-JUN-2006, sequence version 2.
DT 25-MAY-2022, entry version 137.
DE RecName: Full=60S ribosomal protein L24-1;
GN Name=RPL24A; OrderedLocusNames=At2g36620; ORFNames=F13K3.2, F1O11.25;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, AND INTERACTION WITH TAV.
RX PubMed=11572778; DOI=10.1016/s0092-8674(01)00487-1;
RA Park H.S., Himmelbach A., Browning K.S., Hohn T., Ryabova L.A.;
RT "A plant viral 'reinitiation' factor interacts with the host translational
RT machinery.";
RL Cell 106:723-733(2001).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 38-164.
RC STRAIN=cv. Columbia;
RX PubMed=8580968; DOI=10.1046/j.1365-313x.1996.09010101.x;
RA Cooke R., Raynal M., Laudie M., Grellet F., Delseny M., Morris P.-C.,
RA Guerrier D., Giraudat J., Quigley F., Clabault G., Li Y.-F., Mache R.,
RA Krivitzky M., Gy I.J.-J., Kreis M., Lecharny A., Parmentier Y., Marbach J.,
RA Fleck J., Clement B., Philipps G., Herve C., Bardet C., Tremousaygue D.,
RA Lescure B., Lacomme C., Roby D., Jourjon M.-F., Chabrier P.,
RA Charpenteau J.-L., Desprez T., Amselem J., Chiapello H., Hoefte H.;
RT "Further progress towards a catalogue of all Arabidopsis genes: analysis of
RT a set of 5000 non-redundant ESTs.";
RL Plant J. 9:101-124(1996).
RN [7]
RP GENE FAMILY ORGANIZATION, AND NOMENCLATURE.
RX PubMed=11598216; DOI=10.1104/pp.010265;
RA Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R.,
RA Delseny M., Bailey-Serres J.;
RT "The organization of cytoplasmic ribosomal protein genes in the Arabidopsis
RT genome.";
RL Plant Physiol. 127:398-415(2001).
RN [8]
RP INTERACTION WITH REIL1 AND REIL2.
RX PubMed=24603461; DOI=10.4161/psb.28224;
RA Schmidt S., Dethloff F., Beine-Golovchuk O., Kopka J.;
RT "REIL proteins of Arabidopsis thaliana interact in yeast-2-hybrid assays
RT with homologs of the yeast Rlp24, Rpl24A, Rlp24B, Arx1, and Jjj1
RT proteins.";
RL Plant Signal. Behav. 9:E28224-E28224(2014).
CC -!- FUNCTION: Might have an extraribosomal function in reinitiation of
CC translation. {ECO:0000269|PubMed:11572778}.
CC -!- SUBUNIT: Interacts with the cauliflower mosaic virus transactivator TAV
CC to form a TAV/60S complex (PubMed:11572778). Interacts with REIL1 AND
CC REIL2 (PubMed:24603461). {ECO:0000269|PubMed:11572778,
CC ECO:0000269|PubMed:24603461}.
CC -!- INTERACTION:
CC Q42347; F4K210: MAF19.20; NbExp=3; IntAct=EBI-7217243, EBI-7216904;
CC -!- SIMILARITY: Belongs to the eukaryotic ribosomal protein eL24 family.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAA23385.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR EMBL; AJ293729; CAC01930.1; -; mRNA.
DR EMBL; AC006282; AAD20138.2; -; Genomic_DNA.
DR EMBL; AC006919; AAM15314.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC09274.1; -; Genomic_DNA.
DR EMBL; AY058086; AAL24194.1; -; mRNA.
DR EMBL; AY072350; AAL62342.1; -; mRNA.
DR EMBL; AY114728; AAM48047.1; -; mRNA.
DR EMBL; AY085323; AAM62554.1; -; mRNA.
DR EMBL; F20030; CAA23385.1; ALT_INIT; mRNA.
DR PIR; F84782; F84782.
DR RefSeq; NP_565851.1; NM_129217.5.
DR AlphaFoldDB; Q42347; -.
DR SMR; Q42347; -.
DR BioGRID; 3578; 39.
DR IntAct; Q42347; 2.
DR MINT; Q42347; -.
DR STRING; 3702.AT2G36620.1; -.
DR iPTMnet; Q42347; -.
DR PaxDb; Q42347; -.
DR PRIDE; Q42347; -.
DR ProteomicsDB; 236189; -.
DR EnsemblPlants; AT2G36620.1; AT2G36620.1; AT2G36620.
DR GeneID; 818234; -.
DR Gramene; AT2G36620.1; AT2G36620.1; AT2G36620.
DR KEGG; ath:AT2G36620; -.
DR Araport; AT2G36620; -.
DR TAIR; locus:2040555; AT2G36620.
DR eggNOG; KOG1722; Eukaryota.
DR HOGENOM; CLU_106411_3_0_1; -.
DR InParanoid; Q42347; -.
DR OMA; CESAYFS; -.
DR OrthoDB; 1502432at2759; -.
DR PhylomeDB; Q42347; -.
DR PRO; PR:Q42347; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q42347; baseline and differential.
DR Genevisible; Q42347; AT.
DR GO; GO:0022625; C:cytosolic large ribosomal subunit; HDA:TAIR.
DR GO; GO:0005783; C:endoplasmic reticulum; HDA:TAIR.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0003735; F:structural constituent of ribosome; IDA:CAFA.
DR GO; GO:0002181; P:cytoplasmic translation; IBA:GO_Central.
DR CDD; cd00472; Ribosomal_L24e_L24; 1.
DR Gene3D; 2.30.170.20; -; 1.
DR InterPro; IPR038630; L24e/L24_sf.
DR InterPro; IPR000988; Ribosomal_L24e-rel.
DR InterPro; IPR023442; Ribosomal_L24e_CS.
DR InterPro; IPR011017; TRASH_dom.
DR PANTHER; PTHR10792; PTHR10792; 1.
DR Pfam; PF01246; Ribosomal_L24e; 1.
DR SMART; SM00746; TRASH; 1.
DR PROSITE; PS01073; RIBOSOMAL_L24E; 1.
PE 1: Evidence at protein level;
KW Reference proteome; Ribonucleoprotein; Ribosomal protein.
FT CHAIN 1..164
FT /note="60S ribosomal protein L24-1"
FT /id="PRO_0000244739"
FT REGION 117..164
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 117..136
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 44
FT /note="N -> Y (in Ref. 6)"
FT /evidence="ECO:0000305"
FT CONFLICT 150
FT /note="A -> S (in Ref. 6; CAA23385)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 164 AA; 18850 MW; BA88816244551DC0 CRC64;
MVLKTELCRF SGQKIYPGRG IRFIRSDSQV FLFLNSKCKR YFHNKLKPSK LCWTAMYRKQ
HKKDAAQEAV KRRRRATKKP YSRSIVGATL EVIQKKRAEK PEVRDAAREA ALREIKERIK
KTKDEKKAKK VEYASKQQKS QVKGNIPKSA APKAAKMGGG GGRR
