RL242_ARATH
ID RL242_ARATH Reviewed; 163 AA.
AC P38666; Q33DV0; Q56Z81; Q9LF90;
DT 01-FEB-1995, integrated into UniProtKB/Swiss-Prot.
DT 06-DEC-2002, sequence version 2.
DT 25-MAY-2022, entry version 145.
DE RecName: Full=60S ribosomal protein L24-2 {ECO:0000303|PubMed:11598216};
DE AltName: Full=Protein SHORT VALVE 1 {ECO:0000303|PubMed:16227452};
GN Name=RPL24B {ECO:0000303|PubMed:11598216};
GN Synonyms=STV1 {ECO:0000303|PubMed:16227452};
GN OrderedLocusNames=At3g53020 {ECO:0000312|Araport:AT3G53020};
GN ORFNames=F8J2_190 {ECO:0000312|EMBL:CAB86906.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, AND TISSUE SPECIFICITY.
RC STRAIN=cv. Landsberg erecta;
RX PubMed=16227452; DOI=10.1105/tpc.105.036533;
RA Nishimura T., Wada T., Yamamoto K.T., Okada K.;
RT "The Arabidopsis STV1 protein, responsible for translation reinitiation, is
RT required for auxin-mediated gynoecium patterning.";
RL Plant Cell 17:2940-2953(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=8580968; DOI=10.1046/j.1365-313x.1996.09010101.x;
RA Cooke R., Raynal M., Laudie M., Grellet F., Delseny M., Morris P.-C.,
RA Guerrier D., Giraudat J., Quigley F., Clabault G., Li Y.-F., Mache R.,
RA Krivitzky M., Gy I.J.-J., Kreis M., Lecharny A., Parmentier Y., Marbach J.,
RA Fleck J., Clement B., Philipps G., Herve C., Bardet C., Tremousaygue D.,
RA Lescure B., Lacomme C., Roby D., Jourjon M.-F., Chabrier P.,
RA Charpenteau J.-L., Desprez T., Amselem J., Chiapello H., Hoefte H.;
RT "Further progress towards a catalogue of all Arabidopsis genes: analysis of
RT a set of 5000 non-redundant ESTs.";
RL Plant J. 9:101-124(1996).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 109-163.
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
RN [7]
RP GENE FAMILY ORGANIZATION, AND NOMENCLATURE.
RX PubMed=11598216; DOI=10.1104/pp.010265;
RA Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R.,
RA Delseny M., Bailey-Serres J.;
RT "The organization of cytoplasmic ribosomal protein genes in the Arabidopsis
RT genome.";
RL Plant Physiol. 127:398-415(2001).
RN [8]
RP FUNCTION, AND DISRUPTION PHENOTYPE.
RC STRAIN=cv. Columbia;
RX PubMed=18305007; DOI=10.1242/dev.017913;
RA Yao Y., Ling Q., Wang H., Huang H.;
RT "Ribosomal proteins promote leaf adaxial identity.";
RL Development 135:1325-1334(2008).
RN [9]
RP INTERACTION WITH REIL1 AND REIL2.
RX PubMed=24603461; DOI=10.4161/psb.28224;
RA Schmidt S., Dethloff F., Beine-Golovchuk O., Kopka J.;
RT "REIL proteins of Arabidopsis thaliana interact in yeast-2-hybrid assays
RT with homologs of the yeast Rlp24, Rpl24A, Rlp24B, Arx1, and Jjj1
RT proteins.";
RL Plant Signal. Behav. 9:E28224-E28224(2014).
CC -!- FUNCTION: Might have an extraribosomal function in reinitiation of
CC translation of ETTIN and MONOPTEROS genes that are involved in the
CC auxin-mediated gynoecium patterning (PubMed:16227452). Essential in
CC leaf polarity establishment, probably having a role for translation in
CC leaf dorsoventral patterning to specify leaf adaxial identity
CC (PubMed:18305007). {ECO:0000269|PubMed:16227452,
CC ECO:0000269|PubMed:18305007}.
CC -!- SUBUNIT: Interacts with REIL1 AND REIL2 (PubMed:24603461). Component of
CC the large ribosomal subunit (By similarity).
CC {ECO:0000250|UniProtKB:P46779, ECO:0000269|PubMed:24603461}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000305|PubMed:11598216}. Nucleus
CC {ECO:0000250|UniProtKB:O82204}. Nucleus, nucleolus
CC {ECO:0000250|UniProtKB:O82204}. Nucleus, nucleoplasm
CC {ECO:0000250|UniProtKB:O82204}.
CC -!- TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16227452}.
CC -!- DISRUPTION PHENOTYPE: Abnormal leaf patterning, with the abaxial
CC mesophyll features appearing in the adaxial mesophyll domain.
CC {ECO:0000269|PubMed:18305007}.
CC -!- SIMILARITY: Belongs to the eukaryotic ribosomal protein eL24 family.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=Z26463; Type=Frameshift; Evidence={ECO:0000305};
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DR EMBL; AB199790; BAE48150.1; -; mRNA.
DR EMBL; AL132969; CAB86906.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE79026.1; -; Genomic_DNA.
DR EMBL; AY058129; AAL25545.1; -; mRNA.
DR EMBL; AY093180; AAM13179.1; -; mRNA.
DR EMBL; BT006545; AAP21353.1; -; mRNA.
DR EMBL; Z26463; -; NOT_ANNOTATED_CDS; mRNA.
DR EMBL; AK221088; BAD94945.1; -; mRNA.
DR PIR; T47559; T47559.
DR RefSeq; NP_190870.1; NM_115162.4.
DR AlphaFoldDB; P38666; -.
DR SMR; P38666; -.
DR BioGRID; 9785; 40.
DR IntAct; P38666; 1.
DR STRING; 3702.AT3G53020.1; -.
DR iPTMnet; P38666; -.
DR PaxDb; P38666; -.
DR PRIDE; P38666; -.
DR ProteomicsDB; 237008; -.
DR EnsemblPlants; AT3G53020.1; AT3G53020.1; AT3G53020.
DR GeneID; 824468; -.
DR Gramene; AT3G53020.1; AT3G53020.1; AT3G53020.
DR KEGG; ath:AT3G53020; -.
DR Araport; AT3G53020; -.
DR TAIR; locus:2085246; AT3G53020.
DR eggNOG; KOG1722; Eukaryota.
DR HOGENOM; CLU_106411_3_0_1; -.
DR InParanoid; P38666; -.
DR OMA; MKVETCV; -.
DR OrthoDB; 1502432at2759; -.
DR PhylomeDB; P38666; -.
DR PRO; PR:P38666; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; P38666; baseline and differential.
DR Genevisible; P38666; AT.
DR GO; GO:0005829; C:cytosol; HDA:TAIR.
DR GO; GO:0022625; C:cytosolic large ribosomal subunit; HDA:TAIR.
DR GO; GO:0005730; C:nucleolus; HDA:TAIR.
DR GO; GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0003735; F:structural constituent of ribosome; IDA:CAFA.
DR GO; GO:0009955; P:adaxial/abaxial pattern specification; IMP:UniProtKB.
DR GO; GO:0009734; P:auxin-activated signaling pathway; IMP:TAIR.
DR GO; GO:0002181; P:cytoplasmic translation; IBA:GO_Central.
DR GO; GO:0048467; P:gynoecium development; IMP:TAIR.
DR GO; GO:0009965; P:leaf morphogenesis; IMP:UniProtKB.
DR CDD; cd00472; Ribosomal_L24e_L24; 1.
DR Gene3D; 2.30.170.20; -; 1.
DR InterPro; IPR038630; L24e/L24_sf.
DR InterPro; IPR000988; Ribosomal_L24e-rel.
DR InterPro; IPR023442; Ribosomal_L24e_CS.
DR InterPro; IPR011017; TRASH_dom.
DR PANTHER; PTHR10792; PTHR10792; 1.
DR Pfam; PF01246; Ribosomal_L24e; 1.
DR SMART; SM00746; TRASH; 1.
DR PROSITE; PS01073; RIBOSOMAL_L24E; 1.
PE 1: Evidence at protein level;
KW Cytoplasm; Nucleus; Reference proteome; Ribonucleoprotein;
KW Ribosomal protein.
FT CHAIN 1..163
FT /note="60S ribosomal protein L24-2"
FT /id="PRO_0000136881"
FT REGION 119..163
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 119..136
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 56
FT /note="M -> I (in Ref. 5; Z26463)"
FT /evidence="ECO:0000305"
FT CONFLICT 124
FT /note="D -> V (in Ref. 5; Z26463)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 163 AA; 18632 MW; C7CC84855277E924 CRC64;
MVLKTELCRF SGQKIYPGRG IRFIRSDSQV FLFLNSKCKR YFHNKLKPSK LAWTAMYRKQ
HKKDAAQEAV KRRRRATKKP YSRSIVGATL EVIQKKRAEK PEVRDAAREA ALREIKERIK
KTKDEKKAKK VEFASKQQKV KANFPKAAAA SKGPKVGGGG GKR
