ID   RL2_THEKO               Reviewed;         239 AA.
AC   Q5JDH2;
DT   30-AUG-2005, integrated into UniProtKB/Swiss-Prot.
DT   15-FEB-2005, sequence version 1.
DT   25-MAY-2022, entry version 93.
DE   RecName: Full=50S ribosomal protein L2 {ECO:0000255|HAMAP-Rule:MF_01320};
GN   Name=rpl2 {ECO:0000255|HAMAP-Rule:MF_01320}; OrderedLocusNames=TK1539;
OS   Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
OS   (Pyrococcus kodakaraensis (strain KOD1)).
OC   Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae;
OC   Thermococcus.
OX   NCBI_TaxID=69014;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC BAA-918 / JCM 12380 / KOD1;
RX   PubMed=15710748; DOI=10.1101/gr.3003105;
RA   Fukui T., Atomi H., Kanai T., Matsumi R., Fujiwara S., Imanaka T.;
RT   "Complete genome sequence of the hyperthermophilic archaeon Thermococcus
RT   kodakaraensis KOD1 and comparison with Pyrococcus genomes.";
RL   Genome Res. 15:352-363(2005).
CC   -!- FUNCTION: One of the primary rRNA binding proteins. Required for
CC       association of the 30S and 50S subunits to form the 70S ribosome, for
CC       tRNA binding and peptide bond formation. It has been suggested to have
CC       peptidyltransferase activity; this is somewhat controversial. Makes
CC       several contacts with the 16S rRNA in the 70S ribosome.
CC       {ECO:0000255|HAMAP-Rule:MF_01320}.
CC   -!- SUBUNIT: Part of the 50S ribosomal subunit. Forms a bridge to the 30S
CC       subunit in the 70S ribosome. {ECO:0000255|HAMAP-Rule:MF_01320}.
CC   -!- SIMILARITY: Belongs to the universal ribosomal protein uL2 family.
CC       {ECO:0000255|HAMAP-Rule:MF_01320}.
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DR   EMBL; AP006878; BAD85728.1; -; Genomic_DNA.
DR   RefSeq; WP_011250490.1; NC_006624.1.
DR   PDB; 6SKF; EM; 2.95 A; BC=1-239.
DR   PDB; 6SKG; EM; 2.65 A; BC=1-239.
DR   PDB; 6TH6; EM; 2.55 A; BC=1-239.
DR   PDBsum; 6SKF; -.
DR   PDBsum; 6SKG; -.
DR   PDBsum; 6TH6; -.
DR   AlphaFoldDB; Q5JDH2; -.
DR   SMR; Q5JDH2; -.
DR   STRING; 69014.TK1539; -.
DR   EnsemblBacteria; BAD85728; BAD85728; TK1539.
DR   GeneID; 3235326; -.
DR   KEGG; tko:TK1539; -.
DR   PATRIC; fig|69014.16.peg.1499; -.
DR   eggNOG; arCOG04067; Archaea.
DR   HOGENOM; CLU_036235_0_1_2; -.
DR   InParanoid; Q5JDH2; -.
DR   OMA; SCIELRP; -.
DR   OrthoDB; 74812at2157; -.
DR   PhylomeDB; Q5JDH2; -.
DR   Proteomes; UP000000536; Chromosome.
DR   GO; GO:0022625; C:cytosolic large ribosomal subunit; IBA:GO_Central.
DR   GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR   GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0003735; F:structural constituent of ribosome; IBA:GO_Central.
DR   GO; GO:0002181; P:cytoplasmic translation; IBA:GO_Central.
DR   Gene3D; 2.30.30.30; -; 1.
DR   Gene3D; 2.40.50.140; -; 1.
DR   Gene3D; 4.10.950.10; -; 1.
DR   HAMAP; MF_01320_A; Ribosomal_L2_A; 1.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   InterPro; IPR022666; Rbsml_prot_L2_RNA-bd_dom.
DR   InterPro; IPR014722; Rib_L2_dom2.
DR   InterPro; IPR002171; Ribosomal_L2.
DR   InterPro; IPR023672; Ribosomal_L2_arc.
DR   InterPro; IPR022669; Ribosomal_L2_C.
DR   InterPro; IPR014726; Ribosomal_L2_dom3.
DR   InterPro; IPR008991; Translation_prot_SH3-like_sf.
DR   PANTHER; PTHR13691; PTHR13691; 1.
DR   Pfam; PF00181; Ribosomal_L2; 1.
DR   Pfam; PF03947; Ribosomal_L2_C; 1.
DR   PIRSF; PIRSF002158; Ribosomal_L2; 1.
DR   SMART; SM01383; Ribosomal_L2; 1.
DR   SMART; SM01382; Ribosomal_L2_C; 1.
DR   SUPFAM; SSF50104; SSF50104; 1.
DR   SUPFAM; SSF50249; SSF50249; 1.
PE   1: Evidence at protein level;
KW   3D-structure; Reference proteome; Ribonucleoprotein; Ribosomal protein;
KW   RNA-binding; rRNA-binding.
FT   CHAIN           1..239
FT                   /note="50S ribosomal protein L2"
FT                   /id="PRO_0000129725"
FT   REGION          200..239
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   239 AA;  26041 MW;  6C04E35B6F39CECD CRC64;
     MGKSLIQQRR GKGTTTFRAP SHRYRGAVRY VPLNLVQERT LRGVVEEILH DPGRTAPVAR
     VKFEDGTKKL IIAPEGVLVG QEIYIGPEAP IAIGNTLPLA KIPEGTYVYD IEGVPGDGGK
     YVRAGGTYAL VVSREKDKVI VQLPSGELKA FNPMCRATIG VVAGGGRLEK PIVKAGKAYY
     IAKARNRFWP KPRGVKMNAV NHPHGGKEHH IGRPSTVSRR APPGRKVGHI AARRTGRRK