RL30_MYCS2
ID RL30_MYCS2 Reviewed; 61 AA.
AC A0QSG7; I7F8M3;
DT 15-JAN-2008, integrated into UniProtKB/Swiss-Prot.
DT 09-JAN-2007, sequence version 1.
DT 25-MAY-2022, entry version 97.
DE RecName: Full=50S ribosomal protein L30 {ECO:0000255|HAMAP-Rule:MF_01371};
GN Name=rpmD {ECO:0000255|HAMAP-Rule:MF_01371};
GN OrderedLocusNames=MSMEG_1473, MSMEI_1437;
OS Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium
OS smegmatis).
OC Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae;
OC Mycolicibacterium.
OX NCBI_TaxID=246196;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 700084 / mc(2)155;
RA Fleischmann R.D., Dodson R.J., Haft D.H., Merkel J.S., Nelson W.C.,
RA Fraser C.M.;
RL Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 700084 / mc(2)155;
RX PubMed=17295914; DOI=10.1186/gb-2007-8-2-r20;
RA Deshayes C., Perrodou E., Gallien S., Euphrasie D., Schaeffer C.,
RA Van-Dorsselaer A., Poch O., Lecompte O., Reyrat J.-M.;
RT "Interrupted coding sequences in Mycobacterium smegmatis: authentic
RT mutations or sequencing errors?";
RL Genome Biol. 8:R20.1-R20.9(2007).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 700084 / mc(2)155;
RX PubMed=18955433; DOI=10.1101/gr.081901.108;
RA Gallien S., Perrodou E., Carapito C., Deshayes C., Reyrat J.-M.,
RA Van Dorsselaer A., Poch O., Schaeffer C., Lecompte O.;
RT "Ortho-proteogenomics: multiple proteomes investigation through orthology
RT and a new MS-based protocol.";
RL Genome Res. 19:128-135(2009).
CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000255|HAMAP-
CC Rule:MF_01371}.
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uL30 family.
CC {ECO:0000255|HAMAP-Rule:MF_01371}.
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DR EMBL; CP000480; ABK75416.1; -; Genomic_DNA.
DR EMBL; CP001663; AFP37910.1; -; Genomic_DNA.
DR RefSeq; WP_011727688.1; NZ_SIJM01000016.1.
DR RefSeq; YP_885855.1; NC_008596.1.
DR PDB; 5O60; EM; 3.20 A; a=1-61.
DR PDB; 5O61; EM; 3.31 A; a=1-61.
DR PDB; 5XYM; EM; 3.08 A; Z=1-61.
DR PDB; 5ZEB; EM; 3.40 A; 1=1-61.
DR PDB; 5ZEP; EM; 3.40 A; v=1-61.
DR PDB; 5ZET; EM; 3.20 A; 1=1-61.
DR PDB; 6DZI; EM; 3.46 A; a=2-60.
DR PDB; 6DZP; EM; 3.42 A; a=1-61.
DR PDBsum; 5O60; -.
DR PDBsum; 5O61; -.
DR PDBsum; 5XYM; -.
DR PDBsum; 5ZEB; -.
DR PDBsum; 5ZEP; -.
DR PDBsum; 5ZET; -.
DR PDBsum; 6DZI; -.
DR PDBsum; 6DZP; -.
DR AlphaFoldDB; A0QSG7; -.
DR SMR; A0QSG7; -.
DR IntAct; A0QSG7; 3.
DR STRING; 246196.MSMEI_1437; -.
DR PRIDE; A0QSG7; -.
DR EnsemblBacteria; ABK75416; ABK75416; MSMEG_1473.
DR EnsemblBacteria; AFP37910; AFP37910; MSMEI_1437.
DR GeneID; 66732930; -.
DR KEGG; msg:MSMEI_1437; -.
DR KEGG; msm:MSMEG_1473; -.
DR PATRIC; fig|246196.19.peg.1458; -.
DR eggNOG; COG1841; Bacteria.
DR OMA; GKQNQRD; -.
DR OrthoDB; 2084745at2; -.
DR Proteomes; UP000000757; Chromosome.
DR Proteomes; UP000006158; Chromosome.
DR GO; GO:0015934; C:large ribosomal subunit; IEA:InterPro.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0006412; P:translation; IEA:UniProtKB-UniRule.
DR CDD; cd01658; Ribosomal_L30; 1.
DR Gene3D; 3.30.1390.20; -; 1.
DR HAMAP; MF_01371_B; Ribosomal_L30_B; 1.
DR InterPro; IPR036919; L30_ferredoxin-like_sf.
DR InterPro; IPR005996; Ribosomal_L30_bac-type.
DR InterPro; IPR018038; Ribosomal_L30_CS.
DR InterPro; IPR016082; Ribosomal_L30_ferredoxin-like.
DR PANTHER; PTHR15892; PTHR15892; 1.
DR Pfam; PF00327; Ribosomal_L30; 1.
DR PIRSF; PIRSF002211; Ribosomal_L30_bac-type; 1.
DR SUPFAM; SSF55129; SSF55129; 1.
DR TIGRFAMs; TIGR01308; rpmD_bact; 1.
DR PROSITE; PS00634; RIBOSOMAL_L30; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Reference proteome; Ribonucleoprotein; Ribosomal protein.
FT CHAIN 1..61
FT /note="50S ribosomal protein L30"
FT /id="PRO_1000056075"
FT STRAND 3..7
FT /evidence="ECO:0007829|PDB:5XYM"
FT STRAND 12..14
FT /evidence="ECO:0007829|PDB:5XYM"
FT HELIX 17..26
FT /evidence="ECO:0007829|PDB:5XYM"
FT STRAND 30..32
FT /evidence="ECO:0007829|PDB:5ZET"
FT STRAND 35..38
FT /evidence="ECO:0007829|PDB:5XYM"
FT HELIX 41..49
FT /evidence="ECO:0007829|PDB:5XYM"
FT TURN 51..53
FT /evidence="ECO:0007829|PDB:5ZET"
FT STRAND 55..57
FT /evidence="ECO:0007829|PDB:5XYM"
SQ SEQUENCE 61 AA; 7008 MW; F5183BB0C2DD02EA CRC64;
MAELKITQVR STIGARWKQR ESLRTLGLKK IRQSVVREDN AQTRGLINTV HHLVEVEEVG
K