RL31B_ECOLI
ID RL31B_ECOLI Reviewed; 87 AA.
AC P0A7N1; P71302; Q2MCC5;
DT 07-JUN-2005, integrated into UniProtKB/Swiss-Prot.
DT 07-JUN-2005, sequence version 1.
DT 03-AUG-2022, entry version 107.
DE RecName: Full=50S ribosomal protein L31 type B;
DE AltName: Full=Large ribosomal subunit protein bL31-B {ECO:0000303|PubMed:24524803};
GN Name=ykgM; Synonyms=rpmE2; OrderedLocusNames=b0296, JW5035;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RA Chung E., Allen E., Araujo R., Aparicio A.M., Davis K., Duncan M.,
RA Federspiel N., Hyman R., Kalman S., Komp C., Kurdi O., Lew H., Lin D.,
RA Namath A., Oefner P., Roberts D., Schramm S., Davis R.W.;
RT "Sequence of minutes 4-25 of Escherichia coli.";
RL Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
RN [4]
RP DISCUSSION OF POSSIBLE REGULATION.
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=12904577; DOI=10.1073/pnas.1733691100;
RA Panina E.M., Mironov A.A., Gelfand M.S.;
RT "Comparative genomics of bacterial zinc regulons: enhanced ion transport,
RT pathogenesis, and rearrangement of ribosomal proteins.";
RL Proc. Natl. Acad. Sci. U.S.A. 100:9912-9917(2003).
RN [5]
RP INDUCTION, AND DISRUPTION PHENOTYPE.
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=19377097; DOI=10.1074/jbc.m109.001503;
RA Graham A.I., Hunt S., Stokes S.L., Bramall N., Bunch J., Cox A.G.,
RA McLeod C.W., Poole R.K.;
RT "Severe zinc depletion of Escherichia coli: roles for high affinity zinc
RT binding by ZinT, zinc transport and zinc-independent proteins.";
RL J. Biol. Chem. 284:18377-18389(2009).
RN [6]
RP INDUCTION, AND OPERON STRUCTURE.
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=19734316; DOI=10.1128/jb.00872-09;
RA Hemm M.R., Paul B.J., Miranda-Rios J., Zhang A., Soltanzad N., Storz G.;
RT "Small stress response proteins in Escherichia coli: proteins missed by
RT classical proteomic studies.";
RL J. Bacteriol. 192:46-58(2010).
RN [7]
RP INDUCTION.
RC STRAIN=BW21135;
RX PubMed=22196016; DOI=10.1016/j.jinorgbio.2011.11.022;
RA Hensley M.P., Gunasekera T.S., Easton J.A., Sigdel T.K., Sugarbaker S.A.,
RA Klingbeil L., Breece R.M., Tierney D.L., Crowder M.W.;
RT "Characterization of Zn(II)-responsive ribosomal proteins YkgM and L31 in
RT E. coli.";
RL J. Inorg. Biochem. 111:164-172(2012).
RN [8]
RP NOMENCLATURE.
RX PubMed=24524803; DOI=10.1016/j.sbi.2014.01.002;
RA Ban N., Beckmann R., Cate J.H.D., Dinman J.D., Dragon F., Ellis S.R.,
RA Lafontaine D.L.J., Lindahl L., Liljas A., Lipton J.M., McAlear M.A.,
RA Moore P.B., Noller H.F., Ortega J., Panse V.G., Ramakrishnan V.,
RA Spahn C.M.T., Steitz T.A., Tchorzewski M., Tollervey D., Warren A.J.,
RA Williamson J.R., Wilson D., Yonath A., Yusupov M.;
RT "A new system for naming ribosomal proteins.";
RL Curr. Opin. Struct. Biol. 24:165-169(2014).
CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000250}.
CC -!- INDUCTION: Maximally induced 30 minutes under zinc-limiting conditions,
CC still induced in stationary phase; repressed by the zinc uptake
CC regulation protein Zur. Probably part of the rpmE2-rpmJ2 operon.
CC {ECO:0000269|PubMed:19377097, ECO:0000269|PubMed:19734316,
CC ECO:0000269|PubMed:22196016}.
CC -!- DISRUPTION PHENOTYPE: Grows poorly in the absence of zinc.
CC {ECO:0000269|PubMed:19377097}.
CC -!- SIMILARITY: Belongs to the bacterial ribosomal protein bL31 family.
CC Type B subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAB18024.1; Type=Erroneous initiation; Note=Extended N-terminus.; Evidence={ECO:0000305};
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DR EMBL; U73857; AAB18024.1; ALT_INIT; Genomic_DNA.
DR EMBL; U00096; AAC73399.1; -; Genomic_DNA.
DR EMBL; AP009048; BAE76081.1; -; Genomic_DNA.
DR PIR; H64755; H64755.
DR RefSeq; NP_414830.1; NC_000913.3.
DR RefSeq; WP_000803998.1; NZ_STEB01000020.1.
DR PDB; 6I7V; X-ray; 2.90 A; D7=1-68.
DR PDBsum; 6I7V; -.
DR AlphaFoldDB; P0A7N1; -.
DR SMR; P0A7N1; -.
DR BioGRID; 4263546; 10.
DR BioGRID; 849357; 2.
DR ComplexPortal; CPX-3807; 50S large ribosomal subunit.
DR IntAct; P0A7N1; 2.
DR STRING; 511145.b0296; -.
DR SWISS-2DPAGE; P0A7N1; -.
DR PaxDb; P0A7N1; -.
DR PRIDE; P0A7N1; -.
DR EnsemblBacteria; AAC73399; AAC73399; b0296.
DR EnsemblBacteria; BAE76081; BAE76081; BAE76081.
DR GeneID; 944960; -.
DR KEGG; ecj:JW5035; -.
DR KEGG; eco:b0296; -.
DR PATRIC; fig|511145.12.peg.301; -.
DR EchoBASE; EB4072; -.
DR eggNOG; COG0254; Bacteria.
DR HOGENOM; CLU_114306_2_1_6; -.
DR InParanoid; P0A7N1; -.
DR OMA; FKDMSND; -.
DR PhylomeDB; P0A7N1; -.
DR BioCyc; EcoCyc:G6167-MON; -.
DR PRO; PR:P0A7N1; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:0005737; C:cytoplasm; IDA:ComplexPortal.
DR GO; GO:0022625; C:cytosolic large ribosomal subunit; IDA:EcoCyc.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0034224; P:cellular response to zinc ion starvation; IMP:EcoCyc.
DR GO; GO:0002181; P:cytoplasmic translation; IC:ComplexPortal.
DR Gene3D; 4.10.830.30; -; 1.
DR HAMAP; MF_00502; Ribosomal_L31_2; 1.
DR InterPro; IPR034704; L28p-like.
DR InterPro; IPR002150; Ribosomal_L31.
DR InterPro; IPR027493; Ribosomal_L31_B.
DR InterPro; IPR042105; Ribosomal_L31_sf.
DR PANTHER; PTHR33280; PTHR33280; 1.
DR Pfam; PF01197; Ribosomal_L31; 1.
DR PRINTS; PR01249; RIBOSOMALL31.
DR SUPFAM; SSF143800; SSF143800; 1.
DR TIGRFAMs; TIGR00105; L31; 1.
DR PROSITE; PS01143; RIBOSOMAL_L31; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Reference proteome; Ribonucleoprotein; Ribosomal protein.
FT CHAIN 1..87
FT /note="50S ribosomal protein L31 type B"
FT /id="PRO_0000173222"
SQ SEQUENCE 87 AA; 9920 MW; 10D231F36CECBE39 CRC64;
MKPNIHPEYR TVVFHDTSVD EYFKIGSTIK TDREIELDGV TYPYVTIDVS SKSHPFYTGK
LRTVASEGNV ARFTQRFGRF VSTKKGA
