RL31_ARATH
ID RL31_ARATH Reviewed; 389 AA.
AC P17094; O82401; Q42055; Q93WD0;
DT 01-AUG-1990, integrated into UniProtKB/Swiss-Prot.
DT 23-JAN-2007, sequence version 5.
DT 03-AUG-2022, entry version 167.
DE RecName: Full=60S ribosomal protein L3-1;
DE AltName: Full=Protein EMBRYO DEFECTIVE 2207;
GN Name=ARP1; Synonyms=EMB2207, RPL3A; OrderedLocusNames=At1g43170;
GN ORFNames=F1I21.1;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RX PubMed=2227432; DOI=10.1016/0378-1119(90)90222-d;
RA Kim Y., Zhang H., Scholl R.L.;
RT "Two evolutionarily divergent genes encode a cytoplasmic ribosomal protein
RT of Arabidopsis thaliana.";
RL Gene 93:177-182(1990).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 130-191.
RC STRAIN=cv. Columbia; TISSUE=Seedling;
RX PubMed=8580968; DOI=10.1046/j.1365-313x.1996.09010101.x;
RA Cooke R., Raynal M., Laudie M., Grellet F., Delseny M., Morris P.-C.,
RA Guerrier D., Giraudat J., Quigley F., Clabault G., Li Y.-F., Mache R.,
RA Krivitzky M., Gy I.J.-J., Kreis M., Lecharny A., Parmentier Y., Marbach J.,
RA Fleck J., Clement B., Philipps G., Herve C., Bardet C., Tremousaygue D.,
RA Lescure B., Lacomme C., Roby D., Jourjon M.-F., Chabrier P.,
RA Charpenteau J.-L., Desprez T., Amselem J., Chiapello H., Hoefte H.;
RT "Further progress towards a catalogue of all Arabidopsis genes: analysis of
RT a set of 5000 non-redundant ESTs.";
RL Plant J. 9:101-124(1996).
RN [6]
RP GENE FAMILY ORGANIZATION, AND NOMENCLATURE.
RX PubMed=11598216; DOI=10.1104/pp.010265;
RA Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R.,
RA Delseny M., Bailey-Serres J.;
RT "The organization of cytoplasmic ribosomal protein genes in the Arabidopsis
RT genome.";
RL Plant Physiol. 127:398-415(2001).
RN [7]
RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RC STRAIN=cv. Landsberg erecta;
RX PubMed=17272265; DOI=10.1074/mcp.m600408-mcp200;
RA Maor R., Jones A., Nuehse T.S., Studholme D.J., Peck S.C., Shirasu K.;
RT "Multidimensional protein identification technology (MudPIT) analysis of
RT ubiquitinated proteins in plants.";
RL Mol. Cell. Proteomics 6:601-610(2007).
CC -!- SUBCELLULAR LOCATION: Cytoplasm.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=1;
CC Comment=A number of isoforms are produced. According to EST
CC sequences.;
CC Name=1;
CC IsoId=P17094-1; Sequence=Displayed;
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uL3 family.
CC {ECO:0000305}.
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DR EMBL; M32654; AAA66160.1; -; mRNA.
DR EMBL; AC005687; AAC36018.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE31951.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE31952.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE31953.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE31955.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE31956.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE31957.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE31958.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE31959.1; -; Genomic_DNA.
DR EMBL; AY057487; AAL09721.1; -; mRNA.
DR EMBL; AF327421; AAG42011.1; -; mRNA.
DR EMBL; AF361101; AAK27726.1; -; mRNA.
DR EMBL; AF361809; AAK32822.1; -; mRNA.
DR EMBL; AY039544; AAK62599.1; -; mRNA.
DR EMBL; AY052743; AAK96457.1; -; mRNA.
DR EMBL; Z25950; CAA81111.1; -; mRNA.
DR PIR; E96498; E96498.
DR PIR; JQ0771; JQ0771.
DR RefSeq; NP_001031146.1; NM_001036069.1. [P17094-1]
DR RefSeq; NP_001185148.1; NM_001198219.1. [P17094-1]
DR RefSeq; NP_001185149.1; NM_001198220.1. [P17094-1]
DR RefSeq; NP_001185150.1; NM_001198221.1. [P17094-1]
DR RefSeq; NP_001185151.1; NM_001198222.1. [P17094-1]
DR RefSeq; NP_001185152.1; NM_001198223.1. [P17094-1]
DR RefSeq; NP_175009.1; NM_103469.4. [P17094-1]
DR RefSeq; NP_973966.1; NM_202237.1. [P17094-1]
DR AlphaFoldDB; P17094; -.
DR SMR; P17094; -.
DR BioGRID; 26141; 184.
DR IntAct; P17094; 8.
DR STRING; 3702.AT1G43170.8; -.
DR iPTMnet; P17094; -.
DR MetOSite; P17094; -.
DR PaxDb; P17094; -.
DR PRIDE; P17094; -.
DR ProteomicsDB; 224816; -. [P17094-1]
DR EnsemblPlants; AT1G43170.1; AT1G43170.1; AT1G43170. [P17094-1]
DR EnsemblPlants; AT1G43170.2; AT1G43170.2; AT1G43170. [P17094-1]
DR EnsemblPlants; AT1G43170.3; AT1G43170.3; AT1G43170. [P17094-1]
DR EnsemblPlants; AT1G43170.5; AT1G43170.5; AT1G43170. [P17094-1]
DR EnsemblPlants; AT1G43170.6; AT1G43170.6; AT1G43170. [P17094-1]
DR EnsemblPlants; AT1G43170.7; AT1G43170.7; AT1G43170. [P17094-1]
DR EnsemblPlants; AT1G43170.8; AT1G43170.8; AT1G43170. [P17094-1]
DR EnsemblPlants; AT1G43170.9; AT1G43170.9; AT1G43170. [P17094-1]
DR GeneID; 840916; -.
DR Gramene; AT1G43170.1; AT1G43170.1; AT1G43170. [P17094-1]
DR Gramene; AT1G43170.2; AT1G43170.2; AT1G43170. [P17094-1]
DR Gramene; AT1G43170.3; AT1G43170.3; AT1G43170. [P17094-1]
DR Gramene; AT1G43170.5; AT1G43170.5; AT1G43170. [P17094-1]
DR Gramene; AT1G43170.6; AT1G43170.6; AT1G43170. [P17094-1]
DR Gramene; AT1G43170.7; AT1G43170.7; AT1G43170. [P17094-1]
DR Gramene; AT1G43170.8; AT1G43170.8; AT1G43170. [P17094-1]
DR Gramene; AT1G43170.9; AT1G43170.9; AT1G43170. [P17094-1]
DR KEGG; ath:AT1G43170; -.
DR Araport; AT1G43170; -.
DR TAIR; locus:2018605; AT1G43170.
DR eggNOG; KOG0746; Eukaryota.
DR HOGENOM; CLU_033361_2_1_1; -.
DR InParanoid; P17094; -.
DR OMA; KYASKFD; -.
DR PhylomeDB; P17094; -.
DR PRO; PR:P17094; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; P17094; baseline and differential.
DR Genevisible; P17094; AT.
DR GO; GO:0022625; C:cytosolic large ribosomal subunit; HDA:TAIR.
DR GO; GO:0022626; C:cytosolic ribosome; HDA:TAIR.
DR GO; GO:0005730; C:nucleolus; HDA:TAIR.
DR GO; GO:0005634; C:nucleus; HDA:TAIR.
DR GO; GO:0009505; C:plant-type cell wall; HDA:TAIR.
DR GO; GO:0000325; C:plant-type vacuole; HDA:TAIR.
DR GO; GO:0009506; C:plasmodesma; HDA:TAIR.
DR GO; GO:0042788; C:polysomal ribosome; IDA:CAFA.
DR GO; GO:0005773; C:vacuole; HDA:TAIR.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0003735; F:structural constituent of ribosome; IDA:CAFA.
DR GO; GO:0006412; P:translation; IBA:GO_Central.
DR Gene3D; 4.10.960.10; -; 1.
DR InterPro; IPR045077; L3_arc_euk.
DR InterPro; IPR000597; Ribosomal_L3.
DR InterPro; IPR019926; Ribosomal_L3_CS.
DR InterPro; IPR044892; Ribosomal_L3_dom_3_arc_sf.
DR InterPro; IPR009000; Transl_B-barrel_sf.
DR PANTHER; PTHR11363; PTHR11363; 1.
DR Pfam; PF00297; Ribosomal_L3; 1.
DR SUPFAM; SSF50447; SSF50447; 1.
DR PROSITE; PS00474; RIBOSOMAL_L3; 1.
PE 1: Evidence at protein level;
KW Alternative splicing; Cytoplasm; Reference proteome; Ribonucleoprotein;
KW Ribosomal protein.
FT CHAIN 1..389
FT /note="60S ribosomal protein L3-1"
FT /id="PRO_0000077239"
FT REGION 1..34
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 153
FT /note="M -> V (in Ref. 1; AAA66160)"
FT /evidence="ECO:0000305"
FT CONFLICT 326
FT /note="L -> F (in Ref. 1; AAA66160)"
FT /evidence="ECO:0000305"
FT CONFLICT 335
FT /note="P -> A (in Ref. 1; AAA66160)"
FT /evidence="ECO:0000305"
FT CONFLICT 373
FT /note="R -> Q (in Ref. 1; AAA66160)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 389 AA; 44559 MW; 30A10E72F0705557 CRC64;
MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVREV
EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR SLNTVWAQHL SEEVRRRFYK
NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL EKMKKYATVI RVLAHTQIRK MKGLKQKKAH
MMEIQINGGT IAQKVDFAYS FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR
LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT SRLALEEIKL
KFIDTASIFG HGRFQTSLEK MRFYNRVTK
