RL31_MYCS2
ID RL31_MYCS2 Reviewed; 75 AA.
AC A0R215; I7FR73;
DT 14-APR-2009, integrated into UniProtKB/Swiss-Prot.
DT 09-JAN-2007, sequence version 1.
DT 03-AUG-2022, entry version 96.
DE RecName: Full=50S ribosomal protein L31 {ECO:0000255|HAMAP-Rule:MF_00501};
GN Name=rpmE {ECO:0000255|HAMAP-Rule:MF_00501};
GN OrderedLocusNames=MSMEG_4951, MSMEI_4823;
OS Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium
OS smegmatis).
OC Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae;
OC Mycolicibacterium.
OX NCBI_TaxID=246196;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 700084 / mc(2)155;
RA Fleischmann R.D., Dodson R.J., Haft D.H., Merkel J.S., Nelson W.C.,
RA Fraser C.M.;
RL Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 700084 / mc(2)155;
RX PubMed=17295914; DOI=10.1186/gb-2007-8-2-r20;
RA Deshayes C., Perrodou E., Gallien S., Euphrasie D., Schaeffer C.,
RA Van-Dorsselaer A., Poch O., Lecompte O., Reyrat J.-M.;
RT "Interrupted coding sequences in Mycobacterium smegmatis: authentic
RT mutations or sequencing errors?";
RL Genome Biol. 8:R20.1-R20.9(2007).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 700084 / mc(2)155;
RX PubMed=18955433; DOI=10.1101/gr.081901.108;
RA Gallien S., Perrodou E., Carapito C., Deshayes C., Reyrat J.-M.,
RA Van Dorsselaer A., Poch O., Schaeffer C., Lecompte O.;
RT "Ortho-proteogenomics: multiple proteomes investigation through orthology
RT and a new MS-based protocol.";
RL Genome Res. 19:128-135(2009).
CC -!- FUNCTION: Binds the 23S rRNA. {ECO:0000255|HAMAP-Rule:MF_00501}.
CC -!- COFACTOR:
CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105;
CC Evidence={ECO:0000255|HAMAP-Rule:MF_00501};
CC Note=Binds 1 zinc ion per subunit. {ECO:0000255|HAMAP-Rule:MF_00501};
CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000255|HAMAP-
CC Rule:MF_00501}.
CC -!- SIMILARITY: Belongs to the bacterial ribosomal protein bL31 family.
CC Type A subfamily. {ECO:0000255|HAMAP-Rule:MF_00501}.
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DR EMBL; CP000480; ABK71247.1; -; Genomic_DNA.
DR EMBL; CP001663; AFP41268.1; -; Genomic_DNA.
DR RefSeq; WP_003896340.1; NZ_SIJM01000019.1.
DR RefSeq; YP_889203.1; NC_008596.1.
DR PDB; 5O5J; EM; 3.45 A; g=1-75.
DR PDB; 5O60; EM; 3.20 A; g=1-75.
DR PDB; 5O61; EM; 3.31 A; g=1-75.
DR PDB; 5ZEB; EM; 3.40 A; 2=1-75.
DR PDB; 5ZEP; EM; 3.40 A; y=1-75.
DR PDB; 5ZET; EM; 3.20 A; 2=1-75.
DR PDBsum; 5O5J; -.
DR PDBsum; 5O60; -.
DR PDBsum; 5O61; -.
DR PDBsum; 5ZEB; -.
DR PDBsum; 5ZEP; -.
DR PDBsum; 5ZET; -.
DR AlphaFoldDB; A0R215; -.
DR SMR; A0R215; -.
DR IntAct; A0R215; 3.
DR STRING; 246196.MSMEI_4823; -.
DR PRIDE; A0R215; -.
DR EnsemblBacteria; ABK71247; ABK71247; MSMEG_4951.
DR EnsemblBacteria; AFP41268; AFP41268; MSMEI_4823.
DR GeneID; 66736272; -.
DR KEGG; msg:MSMEI_4823; -.
DR KEGG; msm:MSMEG_4951; -.
DR PATRIC; fig|246196.19.peg.4830; -.
DR eggNOG; COG0254; Bacteria.
DR OMA; WYPDAKV; -.
DR OrthoDB; 2014569at2; -.
DR Proteomes; UP000000757; Chromosome.
DR Proteomes; UP000006158; Chromosome.
DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0006412; P:translation; IEA:UniProtKB-UniRule.
DR Gene3D; 4.10.830.30; -; 1.
DR HAMAP; MF_00501; Ribosomal_L31_1; 1.
DR InterPro; IPR034704; L28p-like.
DR InterPro; IPR002150; Ribosomal_L31.
DR InterPro; IPR027491; Ribosomal_L31_A.
DR InterPro; IPR042105; Ribosomal_L31_sf.
DR PANTHER; PTHR33280; PTHR33280; 1.
DR Pfam; PF01197; Ribosomal_L31; 1.
DR PRINTS; PR01249; RIBOSOMALL31.
DR SUPFAM; SSF143800; SSF143800; 1.
DR TIGRFAMs; TIGR00105; L31; 1.
DR PROSITE; PS01143; RIBOSOMAL_L31; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Metal-binding; Reference proteome; Ribonucleoprotein;
KW Ribosomal protein; RNA-binding; rRNA-binding; Zinc.
FT CHAIN 1..75
FT /note="50S ribosomal protein L31"
FT /id="PRO_1000126666"
FT BINDING 16
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00501"
FT BINDING 18
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00501"
FT BINDING 38
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00501"
FT BINDING 41
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00501"
FT STRAND 3..6
FT /evidence="ECO:0007829|PDB:5ZET"
FT STRAND 10..15
FT /evidence="ECO:0007829|PDB:5ZET"
FT STRAND 21..27
FT /evidence="ECO:0007829|PDB:5ZET"
FT STRAND 29..34
FT /evidence="ECO:0007829|PDB:5ZET"
FT TURN 39..41
FT /evidence="ECO:0007829|PDB:5O60"
FT HELIX 43..53
FT /evidence="ECO:0007829|PDB:5ZET"
FT HELIX 57..64
FT /evidence="ECO:0007829|PDB:5ZET"
SQ SEQUENCE 75 AA; 8296 MW; D05971676DE383D0 CRC64;
MKTGIHPEYV DTTVQCGCGH SFTTRSTKQS GTIVVEVCSQ CHPFYTGKQK ILDSGGRVAR
FEKRYGKRNK AAADK
