RL362_ARATH
ID RL362_ARATH Reviewed; 112 AA.
AC Q9M352; Q8L5U3;
DT 13-DEC-2001, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 25-MAY-2022, entry version 130.
DE RecName: Full=60S ribosomal protein L36-2;
GN Name=RPL36B; OrderedLocusNames=At3g53740; ORFNames=F5K20_40;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY ORGANIZATION, AND NOMENCLATURE.
RX PubMed=11598216; DOI=10.1104/pp.010265;
RA Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R.,
RA Delseny M., Bailey-Serres J.;
RT "The organization of cytoplasmic ribosomal protein genes in the Arabidopsis
RT genome.";
RL Plant Physiol. 127:398-415(2001).
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q9M352-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q9M352-2; Sequence=VSP_019715;
CC -!- SIMILARITY: Belongs to the eukaryotic ribosomal protein eL36 family.
CC {ECO:0000305}.
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DR EMBL; AL132960; CAB88336.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE79134.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE79135.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE79136.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE79137.1; -; Genomic_DNA.
DR EMBL; AY062791; AAL32869.1; -; mRNA.
DR EMBL; AY081579; AAM10141.1; -; mRNA.
DR EMBL; AY086677; AAM63733.1; -; mRNA.
DR PIR; T45914; T45914.
DR RefSeq; NP_001030855.1; NM_001035778.3. [Q9M352-1]
DR RefSeq; NP_001078279.1; NM_001084810.2. [Q9M352-1]
DR RefSeq; NP_566987.1; NM_115234.2. [Q9M352-2]
DR RefSeq; NP_850697.1; NM_180366.4. [Q9M352-1]
DR AlphaFoldDB; Q9M352; -.
DR SMR; Q9M352; -.
DR BioGRID; 9858; 159.
DR STRING; 3702.AT3G53740.4; -.
DR PaxDb; Q9M352; -.
DR PRIDE; Q9M352; -.
DR ProteomicsDB; 237028; -. [Q9M352-1]
DR EnsemblPlants; AT3G53740.1; AT3G53740.1; AT3G53740. [Q9M352-2]
DR EnsemblPlants; AT3G53740.2; AT3G53740.2; AT3G53740. [Q9M352-1]
DR EnsemblPlants; AT3G53740.3; AT3G53740.3; AT3G53740. [Q9M352-1]
DR EnsemblPlants; AT3G53740.4; AT3G53740.4; AT3G53740. [Q9M352-1]
DR GeneID; 824541; -.
DR Gramene; AT3G53740.1; AT3G53740.1; AT3G53740. [Q9M352-2]
DR Gramene; AT3G53740.2; AT3G53740.2; AT3G53740. [Q9M352-1]
DR Gramene; AT3G53740.3; AT3G53740.3; AT3G53740. [Q9M352-1]
DR Gramene; AT3G53740.4; AT3G53740.4; AT3G53740. [Q9M352-1]
DR KEGG; ath:AT3G53740; -.
DR Araport; AT3G53740; -.
DR TAIR; locus:2084395; AT3G53740.
DR eggNOG; KOG3452; Eukaryota.
DR HOGENOM; CLU_140672_0_0_1; -.
DR InParanoid; Q9M352; -.
DR OMA; GMHIRIM; -.
DR PhylomeDB; Q9M352; -.
DR PRO; PR:Q9M352; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9M352; baseline and differential.
DR Genevisible; Q9M352; AT.
DR GO; GO:0005829; C:cytosol; HDA:TAIR.
DR GO; GO:0022625; C:cytosolic large ribosomal subunit; HDA:TAIR.
DR GO; GO:0022626; C:cytosolic ribosome; HDA:TAIR.
DR GO; GO:0000325; C:plant-type vacuole; HDA:TAIR.
DR GO; GO:0003735; F:structural constituent of ribosome; IDA:CAFA.
DR GO; GO:0002181; P:cytoplasmic translation; IBA:GO_Central.
DR Gene3D; 1.10.10.1760; -; 1.
DR InterPro; IPR038097; L36e_sf.
DR InterPro; IPR000509; Ribosomal_L36e.
DR PANTHER; PTHR10114; PTHR10114; 1.
DR Pfam; PF01158; Ribosomal_L36e; 1.
DR PROSITE; PS01190; RIBOSOMAL_L36E; 1.
PE 3: Inferred from homology;
KW Alternative splicing; Reference proteome; Ribonucleoprotein;
KW Ribosomal protein.
FT CHAIN 1..112
FT /note="60S ribosomal protein L36-2"
FT /id="PRO_0000195013"
FT REGION 79..112
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 67..75
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|Ref.4"
FT /id="VSP_019715"
SQ SEQUENCE 112 AA; 12676 MW; 3485A3D86A63C423 CRC64;
MTTPQVKTGL FVGLNKGHVV TRRELAPRPR SRKGKTSKRT IFIRNLIKEV AGQAPYEKRI
TELLKVGKDK RALKVAKRKL GTHKRAKRKR EEMSSVLRKM RSGGGGATEK KK
