RL391_ORYSJ
ID RL391_ORYSJ Reviewed; 51 AA.
AC Q6KAJ8; A0A0P0VQS4; Q0DWT0; Q0DWT2;
DT 05-OCT-2010, integrated into UniProtKB/Swiss-Prot.
DT 05-OCT-2010, sequence version 2.
DT 25-MAY-2022, entry version 90.
DE RecName: Full=60S ribosomal protein L39-1;
GN Name=RPL39A; OrderedLocusNames=Os02g0797200;
GN ORFNames=OJ1004_E04.27, OsJ_08725;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC TISSUE=Anther;
RA Hihara Y., Umeda M., Hara C., Liu Q., Aotsuka S., Toriyama K., Uchimiya H.;
RT "Random sequencing of cDNA library from rice anthers at the uninucleate
RT microspore stage.";
RL Submitted (MAR-1994) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
CC -!- SIMILARITY: Belongs to the eukaryotic ribosomal protein eL39 family.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAD19088.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAF10306.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=D29725; Type=Frameshift; Evidence={ECO:0000305};
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DR EMBL; D29725; -; NOT_ANNOTATED_CDS; mRNA.
DR EMBL; AP003975; BAD19088.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008208; BAF10306.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014958; BAS81373.1; -; Genomic_DNA.
DR EMBL; CM000139; EAZ24946.1; -; Genomic_DNA.
DR RefSeq; XP_015622685.1; XM_015767199.1.
DR RefSeq; XP_015622686.1; XM_015767200.1.
DR RefSeq; XP_015622687.1; XM_015767201.1.
DR AlphaFoldDB; Q6KAJ8; -.
DR SMR; Q6KAJ8; -.
DR STRING; 4530.OS02T0797200-01; -.
DR PaxDb; Q6KAJ8; -.
DR EnsemblPlants; Os02t0797200-01; Os02t0797200-01; Os02g0797200.
DR GeneID; 4331011; -.
DR GeneID; 4331014; -.
DR Gramene; Os02t0797200-01; Os02t0797200-01; Os02g0797200.
DR KEGG; osa:4331011; -.
DR KEGG; osa:4331014; -.
DR eggNOG; KOG0002; Eukaryota.
DR HOGENOM; CLU_181948_1_2_1; -.
DR InParanoid; Q6KAJ8; -.
DR OMA; PRSQGFK; -.
DR OrthoDB; 1618745at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000007752; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR ExpressionAtlas; Q6KAJ8; baseline and differential.
DR Genevisible; Q6KAJ8; OS.
DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR Gene3D; 1.10.1620.10; -; 1.
DR HAMAP; MF_00629; Ribosomal_L39e; 1.
DR InterPro; IPR000077; Ribosomal_L39.
DR InterPro; IPR020083; Ribosomal_L39_CS.
DR InterPro; IPR023626; Ribosomal_L39e_dom_sf.
DR Pfam; PF00832; Ribosomal_L39; 1.
DR SUPFAM; SSF48662; SSF48662; 1.
DR PROSITE; PS00051; RIBOSOMAL_L39E; 1.
PE 3: Inferred from homology;
KW Reference proteome; Ribonucleoprotein; Ribosomal protein.
FT CHAIN 1..51
FT /note="60S ribosomal protein L39-1"
FT /id="PRO_0000398169"
SQ SEQUENCE 51 AA; 6513 MW; 4E776376F34FC2D6 CRC64;
MPSHKTFRIK KKLAKKMRQN RPIPYWIRMR TDNTIRYNAK RRHWRRTKLG F
