ID   RL392_ORYSJ             Reviewed;          51 AA.
AC   P51426; Q0DWT0; Q6KAJ6;
DT   01-OCT-1996, integrated into UniProtKB/Swiss-Prot.
DT   23-NOV-2004, sequence version 2.
DT   03-AUG-2022, entry version 118.
DE   RecName: Full=60S ribosomal protein L39-2;
GN   Name=RPL39B; OrderedLocusNames=Os02g0797200, LOC_Os02g55390;
GN   ORFNames=OJ1004_E04.30, OsJ_08727;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA   Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA   Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA   Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA   McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
RN   [6]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RG   The rice full-length cDNA consortium;
RT   "Oryza sativa full length cDNA.";
RL   Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases.
CC   -!- SIMILARITY: Belongs to the eukaryotic ribosomal protein eL39 family.
CC       {ECO:0000305}.
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DR   EMBL; AP003975; BAD19090.1; -; Genomic_DNA.
DR   EMBL; AP008208; BAF10308.1; -; Genomic_DNA.
DR   EMBL; AP014958; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; CM000139; EAZ24944.1; -; Genomic_DNA.
DR   EMBL; AK120800; BAH00179.1; -; mRNA.
DR   EMBL; AK243036; BAH01416.1; -; mRNA.
DR   RefSeq; XP_015622685.1; XM_015767199.1.
DR   RefSeq; XP_015622686.1; XM_015767200.1.
DR   RefSeq; XP_015622687.1; XM_015767201.1.
DR   AlphaFoldDB; P51426; -.
DR   SMR; P51426; -.
DR   STRING; 39947.P51426; -.
DR   PRIDE; P51426; -.
DR   EnsemblPlants; Os02t0797200-01; Os02t0797200-01; Os02g0797200.
DR   GeneID; 4331011; -.
DR   GeneID; 4331014; -.
DR   Gramene; Os02t0797200-01; Os02t0797200-01; Os02g0797200.
DR   KEGG; osa:4331011; -.
DR   KEGG; osa:4331014; -.
DR   HOGENOM; CLU_181948_1_2_1; -.
DR   InParanoid; P51426; -.
DR   OrthoDB; 1618745at2759; -.
DR   Proteomes; UP000000763; Chromosome 2.
DR   Proteomes; UP000007752; Chromosome 2.
DR   Proteomes; UP000059680; Chromosome 2.
DR   ExpressionAtlas; P51426; baseline and differential.
DR   Genevisible; P51426; OS.
DR   GO; GO:0022625; C:cytosolic large ribosomal subunit; IBA:GO_Central.
DR   GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR   GO; GO:0006412; P:translation; IEA:InterPro.
DR   Gene3D; 1.10.1620.10; -; 1.
DR   HAMAP; MF_00629; Ribosomal_L39e; 1.
DR   InterPro; IPR000077; Ribosomal_L39.
DR   InterPro; IPR020083; Ribosomal_L39_CS.
DR   InterPro; IPR023626; Ribosomal_L39e_dom_sf.
DR   Pfam; PF00832; Ribosomal_L39; 1.
DR   SUPFAM; SSF48662; SSF48662; 1.
DR   PROSITE; PS00051; RIBOSOMAL_L39E; 1.
PE   3: Inferred from homology;
KW   Reference proteome; Ribonucleoprotein; Ribosomal protein.
FT   CHAIN           1..51
FT                   /note="60S ribosomal protein L39-2"
FT                   /id="PRO_0000127036"
SQ   SEQUENCE   51 AA;  6513 MW;  4E776376F34FC2D6 CRC64;
     MPSHKTFRIK KKLAKKMRQN RPIPYWIRMR TDNTIRYNAK RRHWRRTKLG F