ID   RL393_ORYSJ             Reviewed;          51 AA.
AC   Q5SMI4; A0A0P0WTQ1;
DT   05-OCT-2010, integrated into UniProtKB/Swiss-Prot.
DT   21-DEC-2004, sequence version 1.
DT   03-AUG-2022, entry version 97.
DE   RecName: Full=60S ribosomal protein L39-3;
GN   Name=RPL39C; OrderedLocusNames=Os06g0181566, LOC_Os06g08320;
GN   ORFNames=OsJ_20351, OSJNBa0035I03.41, OSJNBb0019L07.23;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA].
RC   STRAIN=cv. Nipponbare; TISSUE=Root;
RA   Minobe Y., Sasaki T.;
RT   "Rice cDNA from root.";
RL   Submitted (JAN-1994) to the EMBL/GenBank/DDBJ databases.
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA   Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA   Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA   Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA   McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [6]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RG   The rice full-length cDNA consortium;
RT   "Oryza sativa full length cDNA.";
RL   Submitted (SEP-2007) to the EMBL/GenBank/DDBJ databases.
CC   -!- SIMILARITY: Belongs to the eukaryotic ribosomal protein eL39 family.
CC       {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=D28313; Type=Frameshift; Evidence={ECO:0000305};
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DR   EMBL; D28313; -; NOT_ANNOTATED_CDS; mRNA.
DR   EMBL; AP003019; BAD72315.1; -; Genomic_DNA.
DR   EMBL; AP007257; BAD72572.1; -; Genomic_DNA.
DR   EMBL; AP008212; BAH93365.1; -; Genomic_DNA.
DR   EMBL; AP014962; BAS96472.1; -; Genomic_DNA.
DR   EMBL; CM000143; EAZ36044.1; -; Genomic_DNA.
DR   EMBL; AK287753; -; NOT_ANNOTATED_CDS; mRNA.
DR   RefSeq; XP_015641439.1; XM_015785953.1.
DR   AlphaFoldDB; Q5SMI4; -.
DR   SMR; Q5SMI4; -.
DR   STRING; 4530.OS06T0181566-01; -.
DR   PaxDb; Q5SMI4; -.
DR   PRIDE; Q5SMI4; -.
DR   EnsemblPlants; Os06t0181566-01; Os06t0181566-01; Os06g0181566.
DR   GeneID; 9268459; -.
DR   Gramene; Os06t0181566-01; Os06t0181566-01; Os06g0181566.
DR   KEGG; osa:9268459; -.
DR   eggNOG; KOG0002; Eukaryota.
DR   HOGENOM; CLU_181948_1_2_1; -.
DR   InParanoid; Q5SMI4; -.
DR   OMA; MKRRHWR; -.
DR   OrthoDB; 1618745at2759; -.
DR   Proteomes; UP000000763; Chromosome 6.
DR   Proteomes; UP000007752; Chromosome 6.
DR   Proteomes; UP000059680; Chromosome 6.
DR   Genevisible; Q5SMI4; OS.
DR   GO; GO:0022625; C:cytosolic large ribosomal subunit; IBA:GO_Central.
DR   GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR   GO; GO:0006412; P:translation; IEA:InterPro.
DR   Gene3D; 1.10.1620.10; -; 1.
DR   HAMAP; MF_00629; Ribosomal_L39e; 1.
DR   InterPro; IPR000077; Ribosomal_L39.
DR   InterPro; IPR020083; Ribosomal_L39_CS.
DR   InterPro; IPR023626; Ribosomal_L39e_dom_sf.
DR   Pfam; PF00832; Ribosomal_L39; 1.
DR   SUPFAM; SSF48662; SSF48662; 1.
DR   PROSITE; PS00051; RIBOSOMAL_L39E; 1.
PE   3: Inferred from homology;
KW   Reference proteome; Ribonucleoprotein; Ribosomal protein.
FT   CHAIN           1..51
FT                   /note="60S ribosomal protein L39-3"
FT                   /id="PRO_0000398170"
SQ   SEQUENCE   51 AA;  6485 MW;  4E7763750080FDD6 CRC64;
     MPSHKTFQIK KKLAKKMRQN RPIPYWIRMR TDNTIRYNAK RRHWRRTKLG F