RL44E_PYRAB
ID RL44E_PYRAB Reviewed; 94 AA.
AC Q9UXZ2; G8ZK80;
DT 20-JUN-2001, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 100.
DE RecName: Full=50S ribosomal protein L44e {ECO:0000255|HAMAP-Rule:MF_01476};
GN Name=rpl44e {ECO:0000255|HAMAP-Rule:MF_01476};
GN OrderedLocusNames=PYRAB17150; ORFNames=PAB1221;
OS Pyrococcus abyssi (strain GE5 / Orsay).
OC Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae;
OC Pyrococcus.
OX NCBI_TaxID=272844;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=GE5 / Orsay;
RX PubMed=12622808; DOI=10.1046/j.1365-2958.2003.03381.x;
RA Cohen G.N., Barbe V., Flament D., Galperin M., Heilig R., Lecompte O.,
RA Poch O., Prieur D., Querellou J., Ripp R., Thierry J.-C., Van der Oost J.,
RA Weissenbach J., Zivanovic Y., Forterre P.;
RT "An integrated analysis of the genome of the hyperthermophilic archaeon
RT Pyrococcus abyssi.";
RL Mol. Microbiol. 47:1495-1512(2003).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=GE5 / Orsay;
RX PubMed=22057919; DOI=10.1007/s00284-011-0035-x;
RA Gao J., Wang J.;
RT "Re-annotation of two hyperthermophilic archaea Pyrococcus abyssi GE5 and
RT Pyrococcus furiosus DSM 3638.";
RL Curr. Microbiol. 64:118-129(2012).
CC -!- FUNCTION: Binds to the 23S rRNA. {ECO:0000255|HAMAP-Rule:MF_01476}.
CC -!- COFACTOR:
CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105;
CC Evidence={ECO:0000255|HAMAP-Rule:MF_01476};
CC Note=Binds 1 zinc ion per subunit. {ECO:0000255|HAMAP-Rule:MF_01476};
CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000255|HAMAP-
CC Rule:MF_01476}.
CC -!- SIMILARITY: Belongs to the eukaryotic ribosomal protein eL42 family.
CC {ECO:0000255|HAMAP-Rule:MF_01476}.
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DR EMBL; AJ248288; CAB50620.1; -; Genomic_DNA.
DR EMBL; HE613800; CCE71187.1; -; Genomic_DNA.
DR PIR; F75022; F75022.
DR RefSeq; WP_010868833.1; NC_000868.1.
DR AlphaFoldDB; Q9UXZ2; -.
DR SMR; Q9UXZ2; -.
DR STRING; 272844.PAB1221; -.
DR EnsemblBacteria; CAB50620; CAB50620; PAB1221.
DR GeneID; 1496016; -.
DR KEGG; pab:PAB1221; -.
DR PATRIC; fig|272844.11.peg.1832; -.
DR eggNOG; arCOG04109; Archaea.
DR HOGENOM; CLU_114645_3_0_2; -.
DR OMA; CKKHTIH; -.
DR OrthoDB; 106603at2157; -.
DR PhylomeDB; Q9UXZ2; -.
DR Proteomes; UP000000810; Chromosome.
DR Proteomes; UP000009139; Chromosome.
DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR GO; GO:0070180; F:large ribosomal subunit rRNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-UniRule.
DR GO; GO:0006412; P:translation; IEA:UniProtKB-UniRule.
DR HAMAP; MF_01476; Ribosomal_L44e; 1.
DR InterPro; IPR000552; Ribosomal_L44e.
DR InterPro; IPR011332; Ribosomal_zn-bd.
DR PANTHER; PTHR10369; PTHR10369; 1.
DR Pfam; PF00935; Ribosomal_L44; 1.
DR SUPFAM; SSF57829; SSF57829; 1.
DR PROSITE; PS01172; RIBOSOMAL_L44E; 1.
PE 3: Inferred from homology;
KW Metal-binding; Ribonucleoprotein; Ribosomal protein; RNA-binding;
KW rRNA-binding; Zinc; Zinc-finger.
FT CHAIN 1..94
FT /note="50S ribosomal protein L44e"
FT /id="PRO_0000149153"
FT ZN_FING 11..74
FT /note="C4-type"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01476"
FT BINDING 11
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01476"
FT BINDING 14
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01476"
FT BINDING 71
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01476"
FT BINDING 74
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01476"
SQ SEQUENCE 94 AA; 11241 MW; 039AD63C7D7D524C CRC64;
MKYPKQIRTY CPFCKRHTIH KVERVKKRPR SELSAGQRRF RRILKGYGGF PRPKPEGREK
PVKKLDLRFR CTVCGKAHTR GRGFRVKKFE LVEV
