RL4_ACIB5
ID RL4_ACIB5 Reviewed; 200 AA.
AC B7IA38;
DT 14-APR-2009, integrated into UniProtKB/Swiss-Prot.
DT 10-FEB-2009, sequence version 1.
DT 03-AUG-2022, entry version 71.
DE RecName: Full=50S ribosomal protein L4 {ECO:0000255|HAMAP-Rule:MF_01328};
GN Name=rplD {ECO:0000255|HAMAP-Rule:MF_01328}; OrderedLocusNames=AB57_3529;
OS Acinetobacter baumannii (strain AB0057).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Moraxellales; Moraxellaceae;
OC Acinetobacter; Acinetobacter calcoaceticus/baumannii complex.
OX NCBI_TaxID=480119;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=AB0057;
RX PubMed=18931120; DOI=10.1128/jb.00834-08;
RA Adams M.D., Goglin K., Molyneaux N., Hujer K.M., Lavender H., Jamison J.J.,
RA MacDonald I.J., Martin K.M., Russo T., Campagnari A.A., Hujer A.M.,
RA Bonomo R.A., Gill S.R.;
RT "Comparative genome sequence analysis of multidrug-resistant Acinetobacter
RT baumannii.";
RL J. Bacteriol. 190:8053-8064(2008).
CC -!- FUNCTION: One of the primary rRNA binding proteins, this protein
CC initially binds near the 5'-end of the 23S rRNA. It is important during
CC the early stages of 50S assembly. It makes multiple contacts with
CC different domains of the 23S rRNA in the assembled 50S subunit and
CC ribosome. {ECO:0000255|HAMAP-Rule:MF_01328}.
CC -!- FUNCTION: Forms part of the polypeptide exit tunnel.
CC {ECO:0000255|HAMAP-Rule:MF_01328}.
CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000255|HAMAP-
CC Rule:MF_01328}.
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uL4 family.
CC {ECO:0000255|HAMAP-Rule:MF_01328}.
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DR EMBL; CP001182; ACJ42896.1; -; Genomic_DNA.
DR RefSeq; WP_001050255.1; NC_011586.2.
DR PDB; 6V39; EM; 3.04 A; E=1-200.
DR PDB; 6V3A; EM; 2.82 A; E=1-200.
DR PDB; 6V3B; EM; 2.91 A; E=1-200.
DR PDB; 6V3D; EM; 2.95 A; E=1-200.
DR PDB; 7M4V; EM; 2.54 A; E=1-200.
DR PDB; 7M4W; EM; 2.55 A; E=1-200.
DR PDB; 7M4X; EM; 2.66 A; E=1-200.
DR PDB; 7M4Y; EM; 2.50 A; E=1-200.
DR PDB; 7M4Z; EM; 2.92 A; E=1-200.
DR PDB; 7RYF; EM; 2.65 A; E=1-200.
DR PDB; 7RYG; EM; 2.38 A; E=1-200.
DR PDB; 7RYH; EM; 2.43 A; E=1-200.
DR PDBsum; 6V39; -.
DR PDBsum; 6V3A; -.
DR PDBsum; 6V3B; -.
DR PDBsum; 6V3D; -.
DR PDBsum; 7M4V; -.
DR PDBsum; 7M4W; -.
DR PDBsum; 7M4X; -.
DR PDBsum; 7M4Y; -.
DR PDBsum; 7M4Z; -.
DR PDBsum; 7RYF; -.
DR PDBsum; 7RYG; -.
DR PDBsum; 7RYH; -.
DR AlphaFoldDB; B7IA38; -.
DR SMR; B7IA38; -.
DR IntAct; B7IA38; 2.
DR GeneID; 66395741; -.
DR KEGG; abn:AB57_3529; -.
DR HOGENOM; CLU_041575_5_2_6; -.
DR OMA; PQVHILE; -.
DR Proteomes; UP000007094; Chromosome.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProt.
DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0006412; P:translation; IEA:UniProtKB-UniRule.
DR Gene3D; 3.40.1370.10; -; 1.
DR HAMAP; MF_01328_B; Ribosomal_L4_B; 1.
DR InterPro; IPR002136; Ribosomal_L4/L1e.
DR InterPro; IPR023574; Ribosomal_L4_dom_sf.
DR InterPro; IPR013005; Ribosomal_uL4/L1e.
DR PANTHER; PTHR10746; PTHR10746; 1.
DR Pfam; PF00573; Ribosomal_L4; 1.
DR SUPFAM; SSF52166; SSF52166; 1.
DR TIGRFAMs; TIGR03953; rplD_bact; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Ribonucleoprotein; Ribosomal protein; RNA-binding;
KW rRNA-binding.
FT CHAIN 1..200
FT /note="50S ribosomal protein L4"
FT /id="PRO_1000142062"
FT REGION 42..65
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT STRAND 2..4
FT /evidence="ECO:0007829|PDB:7M4V"
FT STRAND 6..8
FT /evidence="ECO:0007829|PDB:7M4V"
FT STRAND 10..12
FT /evidence="ECO:0007829|PDB:7M4V"
FT HELIX 15..18
FT /evidence="ECO:0007829|PDB:7M4V"
FT HELIX 24..37
FT /evidence="ECO:0007829|PDB:7M4V"
FT TURN 48..50
FT /evidence="ECO:0007829|PDB:7M4V"
FT STRAND 61..66
FT /evidence="ECO:0007829|PDB:7M4V"
FT HELIX 97..114
FT /evidence="ECO:0007829|PDB:7M4V"
FT STRAND 117..121
FT /evidence="ECO:0007829|PDB:7M4V"
FT STRAND 126..128
FT /evidence="ECO:0007829|PDB:7M4V"
FT HELIX 130..139
FT /evidence="ECO:0007829|PDB:7M4V"
FT STRAND 143..151
FT /evidence="ECO:0007829|PDB:7M4V"
FT HELIX 154..161
FT /evidence="ECO:0007829|PDB:7M4V"
FT STRAND 166..170
FT /evidence="ECO:0007829|PDB:7M4V"
FT HELIX 171..173
FT /evidence="ECO:0007829|PDB:7M4V"
FT HELIX 176..181
FT /evidence="ECO:0007829|PDB:7M4V"
FT STRAND 185..188
FT /evidence="ECO:0007829|PDB:7M4V"
FT HELIX 189..198
FT /evidence="ECO:0007829|PDB:7M4V"
SQ SEQUENCE 200 AA; 21552 MW; E71323C1C29B76B7 CRC64;
MNLKTVSGSA VELSEVAFGR EFNEALVHQV VTAYLAGGRQ GTRAHKSRAD VSGGGKKPFR
QKGTGRARAG SIRSPIWVGG GKTFAARPQD WSQKVNRKMY RGAMQCILAE LVRQDRLVLV
EEFAVAAPKT KELLAKLNDL NAARALIVTD AVDENLYLAA RNLPHVDVVD ATAIDPVSLI
AFDKVVMSVA AAKKIEVELG
