RL4_SYNJB
ID RL4_SYNJB Reviewed; 316 AA.
AC Q2JIM6;
DT 27-JUN-2006, integrated into UniProtKB/Swiss-Prot.
DT 07-MAR-2006, sequence version 1.
DT 03-AUG-2022, entry version 84.
DE RecName: Full=50S ribosomal protein L4;
GN Name=rplD; Synonyms=rpl4; OrderedLocusNames=CYB_2598;
OS Synechococcus sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria bacterium
OS Yellowstone B-Prime).
OC Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus;
OC unclassified Synechococcus.
OX NCBI_TaxID=321332;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=JA-2-3B'a(2-13);
RX PubMed=18059494; DOI=10.1038/ismej.2007.46;
RA Bhaya D., Grossman A.R., Steunou A.-S., Khuri N., Cohan F.M., Hamamura N.,
RA Melendrez M.C., Bateson M.M., Ward D.M., Heidelberg J.F.;
RT "Population level functional diversity in a microbial community revealed by
RT comparative genomic and metagenomic analyses.";
RL ISME J. 1:703-713(2007).
CC -!- FUNCTION: One of the primary rRNA binding proteins, this protein
CC initially binds near the 5'-end of the 23S rRNA. It is important during
CC the early stages of 50S assembly. It makes multiple contacts with
CC different domains of the 23S rRNA in the assembled 50S subunit and
CC ribosome (By similarity). {ECO:0000250}.
CC -!- FUNCTION: Forms part of the polypeptide exit tunnel. {ECO:0000250}.
CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uL4 family.
CC {ECO:0000305}.
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DR EMBL; CP000240; ABD03528.1; -; Genomic_DNA.
DR RefSeq; WP_011434153.1; NC_007776.1.
DR AlphaFoldDB; Q2JIM6; -.
DR SMR; Q2JIM6; -.
DR STRING; 321332.CYB_2598; -.
DR PRIDE; Q2JIM6; -.
DR KEGG; cyb:CYB_2598; -.
DR eggNOG; COG0088; Bacteria.
DR HOGENOM; CLU_852406_0_0_3; -.
DR OMA; HILYLAL; -.
DR OrthoDB; 1572673at2; -.
DR Proteomes; UP000001938; Chromosome.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProt.
DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0006412; P:translation; IEA:UniProtKB-UniRule.
DR Gene3D; 3.40.1370.10; -; 1.
DR HAMAP; MF_01328_B; Ribosomal_L4_B; 1.
DR InterPro; IPR002136; Ribosomal_L4/L1e.
DR InterPro; IPR023574; Ribosomal_L4_dom_sf.
DR InterPro; IPR013005; Ribosomal_uL4/L1e.
DR PANTHER; PTHR10746; PTHR10746; 1.
DR Pfam; PF00573; Ribosomal_L4; 1.
DR SUPFAM; SSF52166; SSF52166; 1.
DR TIGRFAMs; TIGR03953; rplD_bact; 1.
PE 3: Inferred from homology;
KW Reference proteome; Ribonucleoprotein; Ribosomal protein; RNA-binding;
KW rRNA-binding.
FT CHAIN 1..316
FT /note="50S ribosomal protein L4"
FT /id="PRO_0000242450"
FT REGION 1..211
FT /note="50S ribosomal protein L4"
FT REGION 44..76
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 212..316
FT /note="Unknown"
FT REGION 231..316
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 243..257
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 316 AA; 34660 MW; 888A94C42F06007C CRC64;
MASCVVKNWQ GETVGSAELS LKVARPETAA HILYLALRRQ MTNARQGNAH TKTRAEVRGG
GRKPWKQKGT GRARAGSIRS PLWRKGGVIF GPRKREYNLA MNRKERQLAL RTALQSRVED
LIVVEDFQEQ LNPPKTRAVA QALLRWGVME DQSALLIVAE RSEAVERAVR NIARVKLIGL
DQINVFDLLN VDWVLITVSA LEQLKARWGS DAAPAVLETP SEDAPQADIA EDQALPGDGP
EDQAVPESEH EEAEQTPAQP EAQENQAALQ GRPADPQGPE EQTEEPQDPA EELAQGAEPS
TVEEAETAPA EEESDD
