RL6_THEKO
ID RL6_THEKO Reviewed; 184 AA.
AC Q5JJG4;
DT 28-NOV-2006, integrated into UniProtKB/Swiss-Prot.
DT 15-FEB-2005, sequence version 1.
DT 25-MAY-2022, entry version 88.
DE RecName: Full=50S ribosomal protein L6 {ECO:0000255|HAMAP-Rule:MF_01365};
GN Name=rpl6 {ECO:0000255|HAMAP-Rule:MF_01365}; OrderedLocusNames=TK1525;
OS Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
OS (Pyrococcus kodakaraensis (strain KOD1)).
OC Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae;
OC Thermococcus.
OX NCBI_TaxID=69014;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC BAA-918 / JCM 12380 / KOD1;
RX PubMed=15710748; DOI=10.1101/gr.3003105;
RA Fukui T., Atomi H., Kanai T., Matsumi R., Fujiwara S., Imanaka T.;
RT "Complete genome sequence of the hyperthermophilic archaeon Thermococcus
RT kodakaraensis KOD1 and comparison with Pyrococcus genomes.";
RL Genome Res. 15:352-363(2005).
CC -!- FUNCTION: This protein binds to the 23S rRNA, and is important in its
CC secondary structure. It is located near the subunit interface in the
CC base of the L7/L12 stalk, and near the tRNA binding site of the
CC peptidyltransferase center. {ECO:0000255|HAMAP-Rule:MF_01365}.
CC -!- SUBUNIT: Part of the 50S ribosomal subunit. {ECO:0000255|HAMAP-
CC Rule:MF_01365}.
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uL6 family.
CC {ECO:0000255|HAMAP-Rule:MF_01365}.
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DR EMBL; AP006878; BAD85714.1; -; Genomic_DNA.
DR RefSeq; WP_011250476.1; NC_006624.1.
DR PDB; 6SKF; EM; 2.95 A; BG=1-184.
DR PDB; 6SKG; EM; 2.65 A; BG=1-184.
DR PDB; 6TH6; EM; 2.55 A; BG=1-184.
DR PDBsum; 6SKF; -.
DR PDBsum; 6SKG; -.
DR PDBsum; 6TH6; -.
DR AlphaFoldDB; Q5JJG4; -.
DR SMR; Q5JJG4; -.
DR STRING; 69014.TK1525; -.
DR EnsemblBacteria; BAD85714; BAD85714; TK1525.
DR GeneID; 3233878; -.
DR KEGG; tko:TK1525; -.
DR PATRIC; fig|69014.16.peg.1485; -.
DR eggNOG; arCOG04090; Archaea.
DR HOGENOM; CLU_065464_0_0_2; -.
DR InParanoid; Q5JJG4; -.
DR OMA; VFQDGIY; -.
DR OrthoDB; 80629at2157; -.
DR PhylomeDB; Q5JJG4; -.
DR Proteomes; UP000000536; Chromosome.
DR GO; GO:0022625; C:cytosolic large ribosomal subunit; IBA:GO_Central.
DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003735; F:structural constituent of ribosome; IBA:GO_Central.
DR GO; GO:0002181; P:cytoplasmic translation; IBA:GO_Central.
DR Gene3D; 3.90.930.12; -; 2.
DR HAMAP; MF_01365_A; Ribosomal_L6_A; 1.
DR InterPro; IPR000702; Ribosomal_L6.
DR InterPro; IPR020040; Ribosomal_L6_a/b-dom.
DR InterPro; IPR036789; Ribosomal_L6_a/b-dom_sf.
DR InterPro; IPR002359; Ribosomal_L6_CS2.
DR InterPro; IPR019907; Ribosomal_L6P_arc.
DR PANTHER; PTHR11655; PTHR11655; 1.
DR Pfam; PF00347; Ribosomal_L6; 2.
DR PIRSF; PIRSF002162; Ribosomal_L6; 1.
DR SUPFAM; SSF56053; SSF56053; 2.
DR TIGRFAMs; TIGR03653; uL6_arch; 1.
DR PROSITE; PS00700; RIBOSOMAL_L6_2; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Reference proteome; Ribonucleoprotein; Ribosomal protein;
KW RNA-binding; rRNA-binding.
FT CHAIN 1..184
FT /note="50S ribosomal protein L6"
FT /id="PRO_0000260997"
SQ SEQUENCE 184 AA; 20854 MW; 413648F641EA1E02 CRC64;
MPVDAWIREE IEIPEGVEVT VEGNTVKVKG PKGELQRELK YPGVQIFTED GKVVIYKEFP
RKKDVAIVRT FKAHINNMIK GVTEGFKYRL KVVYSHFPMT VKVQGDEVVI ENFLGEKNPR
RAKILPGVTV KVKGSEIEVE GIDKEAVGQT AANIEQATRI TKWDRRVFQD GIYIVEKAGK
PIKF
