RL74_ARATH
ID RL74_ARATH Reviewed; 244 AA.
AC Q9LHP1;
DT 21-NOV-2003, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 25-MAY-2022, entry version 141.
DE RecName: Full=60S ribosomal protein L7-4;
GN Name=RPL7D; OrderedLocusNames=At3g13580; ORFNames=K20M4.2;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10907853; DOI=10.1093/dnares/7.3.217;
RA Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence
RT features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC
RT clones.";
RL DNA Res. 7:217-221(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY ORGANIZATION, AND NOMENCLATURE.
RX PubMed=11598216; DOI=10.1104/pp.010265;
RA Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R.,
RA Delseny M., Bailey-Serres J.;
RT "The organization of cytoplasmic ribosomal protein genes in the Arabidopsis
RT genome.";
RL Plant Physiol. 127:398-415(2001).
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uL30 family.
CC {ECO:0000305}.
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DR EMBL; AP002038; BAB02600.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE75376.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE75377.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE75378.1; -; Genomic_DNA.
DR EMBL; CP002686; ANM64459.1; -; Genomic_DNA.
DR EMBL; CP002686; ANM64460.1; -; Genomic_DNA.
DR EMBL; CP002686; ANM64461.1; -; Genomic_DNA.
DR EMBL; CP002686; ANM64462.1; -; Genomic_DNA.
DR EMBL; CP002686; ANM64463.1; -; Genomic_DNA.
DR EMBL; CP002686; ANM64464.1; -; Genomic_DNA.
DR EMBL; AY039900; AAK64004.1; -; mRNA.
DR EMBL; AY056112; AAL06999.1; -; mRNA.
DR EMBL; AY077675; AAL76153.1; -; mRNA.
DR RefSeq; NP_001326486.1; NM_001338062.1.
DR RefSeq; NP_001326487.1; NM_001338061.1.
DR RefSeq; NP_001326488.1; NM_001338060.1.
DR RefSeq; NP_001326489.1; NM_001338059.1.
DR RefSeq; NP_001326490.1; NM_001338058.1.
DR RefSeq; NP_001326491.1; NM_001338057.1.
DR RefSeq; NP_187967.1; NM_112204.3.
DR RefSeq; NP_974304.1; NM_202575.1.
DR RefSeq; NP_974305.1; NM_202576.2.
DR AlphaFoldDB; Q9LHP1; -.
DR SMR; Q9LHP1; -.
DR BioGRID; 5894; 166.
DR IntAct; Q9LHP1; 1.
DR STRING; 3702.AT3G13580.3; -.
DR PaxDb; Q9LHP1; -.
DR PRIDE; Q9LHP1; -.
DR ProteomicsDB; 226892; -.
DR EnsemblPlants; AT3G13580.1; AT3G13580.1; AT3G13580.
DR EnsemblPlants; AT3G13580.2; AT3G13580.2; AT3G13580.
DR EnsemblPlants; AT3G13580.3; AT3G13580.3; AT3G13580.
DR EnsemblPlants; AT3G13580.4; AT3G13580.4; AT3G13580.
DR EnsemblPlants; AT3G13580.5; AT3G13580.5; AT3G13580.
DR EnsemblPlants; AT3G13580.6; AT3G13580.6; AT3G13580.
DR EnsemblPlants; AT3G13580.7; AT3G13580.7; AT3G13580.
DR EnsemblPlants; AT3G13580.8; AT3G13580.8; AT3G13580.
DR EnsemblPlants; AT3G13580.9; AT3G13580.9; AT3G13580.
DR GeneID; 820560; -.
DR Gramene; AT3G13580.1; AT3G13580.1; AT3G13580.
DR Gramene; AT3G13580.2; AT3G13580.2; AT3G13580.
DR Gramene; AT3G13580.3; AT3G13580.3; AT3G13580.
DR Gramene; AT3G13580.4; AT3G13580.4; AT3G13580.
DR Gramene; AT3G13580.5; AT3G13580.5; AT3G13580.
DR Gramene; AT3G13580.6; AT3G13580.6; AT3G13580.
DR Gramene; AT3G13580.7; AT3G13580.7; AT3G13580.
DR Gramene; AT3G13580.8; AT3G13580.8; AT3G13580.
DR Gramene; AT3G13580.9; AT3G13580.9; AT3G13580.
DR KEGG; ath:AT3G13580; -.
DR Araport; AT3G13580; -.
DR TAIR; locus:2086809; AT3G13580.
DR eggNOG; KOG3184; Eukaryota.
DR HOGENOM; CLU_055156_0_2_1; -.
DR InParanoid; Q9LHP1; -.
DR OMA; TICAEVE; -.
DR OrthoDB; 1544778at2759; -.
DR PhylomeDB; Q9LHP1; -.
DR PRO; PR:Q9LHP1; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LHP1; baseline and differential.
DR Genevisible; Q9LHP1; AT.
DR GO; GO:0005829; C:cytosol; HDA:TAIR.
DR GO; GO:0022625; C:cytosolic large ribosomal subunit; HDA:TAIR.
DR GO; GO:0022626; C:cytosolic ribosome; HDA:TAIR.
DR GO; GO:0042788; C:polysomal ribosome; IDA:CAFA.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0003735; F:structural constituent of ribosome; IDA:CAFA.
DR GO; GO:0000463; P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IBA:GO_Central.
DR CDD; cd01657; Ribosomal_L7_archeal_euk; 1.
DR Gene3D; 3.30.1390.20; -; 2.
DR InterPro; IPR036919; L30_ferredoxin-like_sf.
DR InterPro; IPR018038; Ribosomal_L30_CS.
DR InterPro; IPR016082; Ribosomal_L30_ferredoxin-like.
DR InterPro; IPR012988; Ribosomal_L30_N.
DR InterPro; IPR039699; Ribosomal_L7/L30.
DR InterPro; IPR005998; Ribosomal_L7_euk.
DR InterPro; IPR035808; Ribosomal_L7_euk_arc.
DR PANTHER; PTHR11524; PTHR11524; 1.
DR Pfam; PF00327; Ribosomal_L30; 1.
DR Pfam; PF08079; Ribosomal_L30_N; 1.
DR SUPFAM; SSF55129; SSF55129; 1.
DR TIGRFAMs; TIGR01310; uL30_euk; 1.
DR PROSITE; PS00634; RIBOSOMAL_L30; 1.
PE 2: Evidence at transcript level;
KW Reference proteome; Ribonucleoprotein; Ribosomal protein.
FT CHAIN 1..244
FT /note="60S ribosomal protein L7-4"
FT /id="PRO_0000104641"
SQ SEQUENCE 244 AA; 28433 MW; 44B4AD5B183C5A6B CRC64;
MTEAESKTVV PESVLKKRKR EEEWALAKKQ ELEAAKKQNA EKRKLIFNRA KQYSKEYQEK
ERELIQLKRE AKLKGGFYVD PEAKLLFIIR IRGINAIDPK TKKILQLLRL RQIFNGVFLK
VNKATINMLR RVEPYVTYGY PNLKSVKELI YKRGFGKLNH QRTALTDNSI VDQGLGKHGI
ICVEDLIHEI MTVGPHFKEA NNFLWPFQLK APLGGMKKKR NHYVEGGDAG NRENFINELV
RRMN
