RL91_ARATH
ID RL91_ARATH Reviewed; 194 AA.
AC P49209; Q9LDX2;
DT 01-FEB-1996, integrated into UniProtKB/Swiss-Prot.
DT 02-AUG-2002, sequence version 3.
DT 25-MAY-2022, entry version 155.
DE RecName: Full=60S ribosomal protein L9-1;
GN Name=RPL9B; OrderedLocusNames=At1g33120; ORFNames=T9L6.2;
GN and
GN Name=RPL9C; OrderedLocusNames=At1g33140; ORFNames=T9L6.5;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA] (AT1G33140).
RC STRAIN=cv. Columbia;
RA Grellet F., Cooke R., Laudie M., Raynal M., Delseny M.;
RL Submitted (DEC-1995) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (AT1G33120 AND AT1G33140).
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (AT1G33120 AND AT1G33140).
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-42 AND 150-195.
RC STRAIN=cv. Columbia; TISSUE=Green siliques;
RX PubMed=8281187; DOI=10.1046/j.1365-313x.1993.04061051.x;
RA Hoefte H., Desprez T., Amselem J., Chiapello H., Rouze P., Caboche M.,
RA Moisan A., Jourjon M.-F., Charpenteau J.-L., Berthomieu P., Guerrier D.,
RA Giraudat J., Quigley F., Thomas F., Yu D.-Y., Mache R., Raynal M.,
RA Cooke R., Grellet F., Delseny M., Parmentier Y., de Marcillac G., Gigot C.,
RA Fleck J., Philipps G., Axelos M., Bardet C., Tremousaygue D., Lescure B.;
RT "An inventory of 1152 expressed sequence tags obtained by partial
RT sequencing of cDNAs from Arabidopsis thaliana.";
RL Plant J. 4:1051-1061(1993).
RN [6]
RP GENE FAMILY ORGANIZATION, AND NOMENCLATURE.
RX PubMed=11598216; DOI=10.1104/pp.010265;
RA Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R.,
RA Delseny M., Bailey-Serres J.;
RT "The organization of cytoplasmic ribosomal protein genes in the Arabidopsis
RT genome.";
RL Plant Physiol. 127:398-415(2001).
RN [7]
RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RC STRAIN=cv. Landsberg erecta;
RX PubMed=17272265; DOI=10.1074/mcp.m600408-mcp200;
RA Maor R., Jones A., Nuehse T.S., Studholme D.J., Peck S.C., Shirasu K.;
RT "Multidimensional protein identification technology (MudPIT) analysis of
RT ubiquitinated proteins in plants.";
RL Mol. Cell. Proteomics 6:601-610(2007).
RN [8]
RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-75, AND IDENTIFICATION BY
RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX PubMed=22092075; DOI=10.1021/pr200917t;
RA Aryal U.K., Krochko J.E., Ross A.R.;
RT "Identification of phosphoproteins in Arabidopsis thaliana leaves using
RT polyethylene glycol fractionation, immobilized metal-ion affinity
RT chromatography, two-dimensional gel electrophoresis and mass
RT spectrometry.";
RL J. Proteome Res. 11:425-437(2012).
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uL6 family.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAA63024.1; Type=Frameshift; Evidence={ECO:0000305};
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DR EMBL; X91958; CAA63024.1; ALT_FRAME; mRNA.
DR EMBL; AC021045; AAF97348.1; -; Genomic_DNA.
DR EMBL; AC021045; AAF97345.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE31568.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE31569.1; -; Genomic_DNA.
DR EMBL; AF324688; AAG40039.1; -; mRNA.
DR EMBL; AF326873; AAG41455.1; -; mRNA.
DR EMBL; AF339694; AAK00376.1; -; mRNA.
DR EMBL; AF375419; AAK53003.1; -; mRNA.
DR EMBL; AY039593; AAK62648.1; -; mRNA.
DR EMBL; AY054156; AAL06817.1; -; mRNA.
DR EMBL; AY058051; AAL24159.1; -; mRNA.
DR EMBL; AY072446; AAL62438.1; -; mRNA.
DR EMBL; AY128910; AAM91310.1; -; mRNA.
DR EMBL; Z17727; CAA79045.1; -; mRNA.
DR EMBL; Z17728; CAA79046.1; -; mRNA.
DR PIR; F86455; F86455.
DR PIR; S71255; S71255.
DR RefSeq; NP_564417.1; NM_103046.4.
DR RefSeq; NP_564418.1; NM_103048.5.
DR AlphaFoldDB; P49209; -.
DR SMR; P49209; -.
DR BioGRID; 25442; 130.
DR BioGRID; 25445; 133.
DR IntAct; P49209; 1.
DR STRING; 3702.AT1G33120.1; -.
DR iPTMnet; P49209; -.
DR PaxDb; P49209; -.
DR PRIDE; P49209; -.
DR ProteomicsDB; 228081; -.
DR EnsemblPlants; AT1G33120.1; AT1G33120.1; AT1G33120.
DR EnsemblPlants; AT1G33140.1; AT1G33140.1; AT1G33140.
DR GeneID; 840208; -.
DR GeneID; 840211; -.
DR Gramene; AT1G33120.1; AT1G33120.1; AT1G33120.
DR Gramene; AT1G33140.1; AT1G33140.1; AT1G33140.
DR KEGG; ath:AT1G33120; -.
DR KEGG; ath:AT1G33140; -.
DR Araport; AT1G33120; -.
DR Araport; AT1G33140; -.
DR TAIR; locus:2196646; AT1G33140.
DR TAIR; locus:2206965; AT1G33120.
DR eggNOG; KOG3255; Eukaryota.
DR HOGENOM; CLU_065464_0_0_1; -.
DR InParanoid; P49209; -.
DR OMA; VFQDGIY; -.
DR OrthoDB; 1408258at2759; -.
DR PhylomeDB; P49209; -.
DR PRO; PR:P49209; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; P49209; baseline and differential.
DR Genevisible; P49209; AT.
DR GO; GO:0009941; C:chloroplast envelope; HDA:TAIR.
DR GO; GO:0022625; C:cytosolic large ribosomal subunit; HDA:TAIR.
DR GO; GO:0022626; C:cytosolic ribosome; HDA:TAIR.
DR GO; GO:0005730; C:nucleolus; HDA:TAIR.
DR GO; GO:0005634; C:nucleus; HDA:TAIR.
DR GO; GO:0000325; C:plant-type vacuole; HDA:TAIR.
DR GO; GO:0009506; C:plasmodesma; HDA:TAIR.
DR GO; GO:0005773; C:vacuole; HDA:TAIR.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0019843; F:rRNA binding; IEA:InterPro.
DR GO; GO:0003735; F:structural constituent of ribosome; IDA:CAFA.
DR GO; GO:0002181; P:cytoplasmic translation; IBA:GO_Central.
DR Gene3D; 3.90.930.12; -; 2.
DR InterPro; IPR000702; Ribosomal_L6.
DR InterPro; IPR020040; Ribosomal_L6_a/b-dom.
DR InterPro; IPR036789; Ribosomal_L6_a/b-dom_sf.
DR InterPro; IPR002359; Ribosomal_L6_CS2.
DR PANTHER; PTHR11655; PTHR11655; 1.
DR Pfam; PF00347; Ribosomal_L6; 2.
DR PIRSF; PIRSF002162; Ribosomal_L6; 1.
DR SUPFAM; SSF56053; SSF56053; 2.
DR PROSITE; PS00700; RIBOSOMAL_L6_2; 1.
PE 1: Evidence at protein level;
KW Phosphoprotein; Reference proteome; Ribonucleoprotein; Ribosomal protein.
FT CHAIN 1..194
FT /note="60S ribosomal protein L9-1"
FT /id="PRO_0000131106"
FT MOD_RES 75
FT /note="Phosphothreonine"
FT /evidence="ECO:0007744|PubMed:22092075"
FT CONFLICT 12
FT /note="I -> R (in Ref. 5; CAA79045)"
FT /evidence="ECO:0000305"
FT CONFLICT 71
FT /note="A -> V (in Ref. 1; CAA63024)"
FT /evidence="ECO:0000305"
FT CONFLICT 78
FT /note="S -> R (in Ref. 1; CAA63024)"
FT /evidence="ECO:0000305"
FT CONFLICT 106
FT /note="A -> V (in Ref. 1; CAA63024)"
FT /evidence="ECO:0000305"
FT CONFLICT 113..114
FT /note="KS -> SL (in Ref. 1; CAA63024)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 194 AA; 22018 MW; 451874EAE5838ECD CRC64;
MKTILSSETM DIPDSVTIKV HAKVIEVEGP RGKLVRDFKH LNLDFQLIKD PETGKKKLKI
DSWFGTRKTS ASIRTALSHV DNLISGVTRG FRYKMRFVYA HFPINASIGG DGKSIEIRNF
LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD GNDIELVSRS CALINQKCHV KKKDIRKFLD
GIYVSEKSKI VEEE
