RL9_DICDI
ID RL9_DICDI Reviewed; 188 AA.
AC Q54XI5;
DT 26-FEB-2008, integrated into UniProtKB/Swiss-Prot.
DT 26-FEB-2008, sequence version 2.
DT 03-AUG-2022, entry version 105.
DE RecName: Full=60S ribosomal protein L9;
GN Name=rpl9; ORFNames=DDB_G0278959;
OS Dictyostelium discoideum (Slime mold).
OC Eukaryota; Amoebozoa; Evosea; Eumycetozoa; Dictyostelia; Dictyosteliales;
OC Dictyosteliaceae; Dictyostelium.
OX NCBI_TaxID=44689;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=AX4;
RX PubMed=15875012; DOI=10.1038/nature03481;
RA Eichinger L., Pachebat J.A., Gloeckner G., Rajandream M.A., Sucgang R.,
RA Berriman M., Song J., Olsen R., Szafranski K., Xu Q., Tunggal B.,
RA Kummerfeld S., Madera M., Konfortov B.A., Rivero F., Bankier A.T.,
RA Lehmann R., Hamlin N., Davies R., Gaudet P., Fey P., Pilcher K., Chen G.,
RA Saunders D., Sodergren E.J., Davis P., Kerhornou A., Nie X., Hall N.,
RA Anjard C., Hemphill L., Bason N., Farbrother P., Desany B., Just E.,
RA Morio T., Rost R., Churcher C.M., Cooper J., Haydock S., van Driessche N.,
RA Cronin A., Goodhead I., Muzny D.M., Mourier T., Pain A., Lu M., Harper D.,
RA Lindsay R., Hauser H., James K.D., Quiles M., Madan Babu M., Saito T.,
RA Buchrieser C., Wardroper A., Felder M., Thangavelu M., Johnson D.,
RA Knights A., Loulseged H., Mungall K.L., Oliver K., Price C., Quail M.A.,
RA Urushihara H., Hernandez J., Rabbinowitsch E., Steffen D., Sanders M.,
RA Ma J., Kohara Y., Sharp S., Simmonds M.N., Spiegler S., Tivey A.,
RA Sugano S., White B., Walker D., Woodward J.R., Winckler T., Tanaka Y.,
RA Shaulsky G., Schleicher M., Weinstock G.M., Rosenthal A., Cox E.C.,
RA Chisholm R.L., Gibbs R.A., Loomis W.F., Platzer M., Kay R.R.,
RA Williams J.G., Dear P.H., Noegel A.A., Barrell B.G., Kuspa A.;
RT "The genome of the social amoeba Dictyostelium discoideum.";
RL Nature 435:43-57(2005).
RN [2]
RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RC STRAIN=AX2;
RX PubMed=16926386; DOI=10.1074/mcp.m600113-mcp200;
RA Gotthardt D., Blancheteau V., Bosserhoff A., Ruppert T., Delorenzi M.,
RA Soldati T.;
RT "Proteomics fingerprinting of phagosome maturation and evidence for the
RT role of a Galpha during uptake.";
RL Mol. Cell. Proteomics 5:2228-2243(2006).
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uL6 family.
CC {ECO:0000305}.
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DR EMBL; AAFI02000024; EAL68081.2; -; Genomic_DNA.
DR RefSeq; XP_647818.2; XM_642726.2.
DR PDB; 5AN9; EM; 3.30 A; B=1-188.
DR PDB; 5ANB; EM; 4.10 A; B=1-188.
DR PDB; 5ANC; EM; 4.20 A; B=1-188.
DR PDB; 6QKL; EM; 3.30 A; B=1-188.
DR PDBsum; 5AN9; -.
DR PDBsum; 5ANB; -.
DR PDBsum; 5ANC; -.
DR PDBsum; 6QKL; -.
DR AlphaFoldDB; Q54XI5; -.
DR SMR; Q54XI5; -.
DR STRING; 44689.DDB0231259; -.
DR PaxDb; Q54XI5; -.
DR PRIDE; Q54XI5; -.
DR EnsemblProtists; EAL68081; EAL68081; DDB_G0278959.
DR GeneID; 8621778; -.
DR KEGG; ddi:DDB_G0278959; -.
DR dictyBase; DDB_G0278959; rpl9.
DR eggNOG; KOG3255; Eukaryota.
DR HOGENOM; CLU_065464_0_0_1; -.
DR InParanoid; Q54XI5; -.
DR OMA; VFQDGIY; -.
DR PhylomeDB; Q54XI5; -.
DR Reactome; R-DDI-156827; L13a-mediated translational silencing of Ceruloplasmin expression.
DR Reactome; R-DDI-1799339; SRP-dependent cotranslational protein targeting to membrane.
DR Reactome; R-DDI-72689; Formation of a pool of free 40S subunits.
DR Reactome; R-DDI-72706; GTP hydrolysis and joining of the 60S ribosomal subunit.
DR Reactome; R-DDI-975956; Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
DR Reactome; R-DDI-975957; Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
DR PRO; PR:Q54XI5; -.
DR Proteomes; UP000002195; Chromosome 3.
DR GO; GO:0022625; C:cytosolic large ribosomal subunit; IBA:GO_Central.
DR GO; GO:0031012; C:extracellular matrix; HDA:dictyBase.
DR GO; GO:0045335; C:phagocytic vesicle; HDA:dictyBase.
DR GO; GO:0019843; F:rRNA binding; IEA:InterPro.
DR GO; GO:0003735; F:structural constituent of ribosome; IBA:GO_Central.
DR GO; GO:0002181; P:cytoplasmic translation; IBA:GO_Central.
DR Gene3D; 3.90.930.12; -; 2.
DR InterPro; IPR000702; Ribosomal_L6.
DR InterPro; IPR020040; Ribosomal_L6_a/b-dom.
DR InterPro; IPR036789; Ribosomal_L6_a/b-dom_sf.
DR InterPro; IPR002359; Ribosomal_L6_CS2.
DR PANTHER; PTHR11655; PTHR11655; 1.
DR Pfam; PF00347; Ribosomal_L6; 2.
DR PIRSF; PIRSF002162; Ribosomal_L6; 1.
DR SUPFAM; SSF56053; SSF56053; 2.
DR PROSITE; PS00700; RIBOSOMAL_L6_2; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Reference proteome; Ribonucleoprotein; Ribosomal protein.
FT CHAIN 1..188
FT /note="60S ribosomal protein L9"
FT /id="PRO_0000319551"
FT STRAND 8..11
FT /evidence="ECO:0007829|PDB:5AN9"
FT STRAND 17..20
FT /evidence="ECO:0007829|PDB:5AN9"
FT STRAND 25..28
FT /evidence="ECO:0007829|PDB:5AN9"
FT STRAND 33..35
FT /evidence="ECO:0007829|PDB:5AN9"
FT STRAND 45..55
FT /evidence="ECO:0007829|PDB:5AN9"
FT HELIX 62..83
FT /evidence="ECO:0007829|PDB:5AN9"
FT STRAND 86..93
FT /evidence="ECO:0007829|PDB:5AN9"
FT STRAND 95..97
FT /evidence="ECO:0007829|PDB:5AN9"
FT STRAND 101..104
FT /evidence="ECO:0007829|PDB:5AN9"
FT TURN 105..108
FT /evidence="ECO:0007829|PDB:5AN9"
FT STRAND 109..112
FT /evidence="ECO:0007829|PDB:5AN9"
FT STRAND 115..117
FT /evidence="ECO:0007829|PDB:5AN9"
FT STRAND 122..125
FT /evidence="ECO:0007829|PDB:5AN9"
FT STRAND 131..133
FT /evidence="ECO:0007829|PDB:5AN9"
FT STRAND 137..139
FT /evidence="ECO:0007829|PDB:5AN9"
FT STRAND 141..147
FT /evidence="ECO:0007829|PDB:5AN9"
FT HELIX 149..162
FT /evidence="ECO:0007829|PDB:5AN9"
FT TURN 170..172
FT /evidence="ECO:0007829|PDB:5AN9"
FT STRAND 176..181
FT /evidence="ECO:0007829|PDB:5AN9"
SQ SEQUENCE 188 AA; 21219 MW; 5CEA4F0987A612F8 CRC64;
MKVINSSRKV QIPENVTVDV KGRSVKVTGP RGTLSKSFDH ASVDINLVGK KELTVDLWFG
NRKQIACIKT ITSIIENMIT GVTKGYEYKM RFVYAHFPIN VAVTDGGRVV EIRNFFGEKI
VRRIELLDGI TCYRNEKAKD EIVLTGNSLE LLSQSCATIQ LRSAIKYKDV RKFLDGIYVS
ERNVLESN
