ID   RL9_ORYSJ               Reviewed;         190 AA.
AC   P49210; O04165; Q0J0R8; Q7XBH6;
DT   01-FEB-1996, integrated into UniProtKB/Swiss-Prot.
DT   27-JUN-2006, sequence version 3.
DT   25-MAY-2022, entry version 119.
DE   RecName: Full=60S ribosomal protein L9;
GN   Name=RPL9; Synonyms=YK426; OrderedLocusNames=Os09g0485900, LOC_Os09g31180;
GN   ORFNames=OsJ_29817 {ECO:0000312|EMBL:EAZ45175.1};
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA].
RC   STRAIN=cv. Hayayuki; TISSUE=Anther;
RA   Liu Q., Shoda K., Hara C., Kawai M., Uchimiya H.;
RT   "Characterization of rice gene (Yk426) induced by GA3.";
RL   Submitted (FEB-1996) to the EMBL/GenBank/DDBJ databases.
RN   [2]
RP   NUCLEOTIDE SEQUENCE [MRNA].
RA   Quanhong Y., Rihe P., Aisheng X.;
RT   "A rice ribosomal L9 similar protein was induced by oxidant burst.";
RL   Submitted (JUN-2003) to the EMBL/GenBank/DDBJ databases.
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [4]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [5]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [6]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA   Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA   Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA   Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA   McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [7]
RP   NUCLEOTIDE SEQUENCE [MRNA] OF 101-190.
RC   TISSUE=Callus;
RA   Nakamura I., Kameya N., Aoki T., Tada T., Norita E., Kanzaki H.,
RA   Uchimiya H.;
RT   "Partial cDNA sequence of ribosomal protein L9 homolog from rice calli
RT   exposed to salt stress.";
RL   Submitted (SEP-1995) to the EMBL/GenBank/DDBJ databases.
CC   -!- SIMILARITY: Belongs to the universal ribosomal protein uL6 family.
CC       {ECO:0000305}.
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DR   EMBL; D83527; BAA19798.1; -; mRNA.
DR   EMBL; AY323481; AAP92747.1; -; mRNA.
DR   EMBL; AC108756; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; AP008215; BAF25434.1; -; Genomic_DNA.
DR   EMBL; AP014965; BAT08699.1; -; Genomic_DNA.
DR   EMBL; CM000146; EAZ45175.1; -; Genomic_DNA.
DR   EMBL; D38012; BAA07209.1; -; mRNA.
DR   PIR; T03761; T03761.
DR   PIR; T04077; T04077.
DR   RefSeq; XP_015612091.1; XM_015756605.1.
DR   AlphaFoldDB; P49210; -.
DR   SMR; P49210; -.
DR   BioGRID; 816459; 1.
DR   STRING; 4530.OS09T0485900-01; -.
DR   PaxDb; P49210; -.
DR   PRIDE; P49210; -.
DR   EnsemblPlants; Os09t0485900-01; Os09t0485900-01; Os09g0485900.
DR   GeneID; 4347422; -.
DR   Gramene; Os09t0485900-01; Os09t0485900-01; Os09g0485900.
DR   KEGG; osa:4347422; -.
DR   eggNOG; KOG3255; Eukaryota.
DR   HOGENOM; CLU_065464_0_0_1; -.
DR   InParanoid; P49210; -.
DR   OMA; VFQDGIY; -.
DR   OrthoDB; 1408258at2759; -.
DR   Proteomes; UP000000763; Chromosome 9.
DR   Proteomes; UP000007752; Chromosome 9.
DR   Proteomes; UP000059680; Chromosome 9.
DR   Genevisible; P49210; OS.
DR   GO; GO:0022625; C:cytosolic large ribosomal subunit; IBA:GO_Central.
DR   GO; GO:0019843; F:rRNA binding; IEA:InterPro.
DR   GO; GO:0003735; F:structural constituent of ribosome; IBA:GO_Central.
DR   GO; GO:0002181; P:cytoplasmic translation; IBA:GO_Central.
DR   Gene3D; 3.90.930.12; -; 2.
DR   InterPro; IPR000702; Ribosomal_L6.
DR   InterPro; IPR020040; Ribosomal_L6_a/b-dom.
DR   InterPro; IPR036789; Ribosomal_L6_a/b-dom_sf.
DR   InterPro; IPR002359; Ribosomal_L6_CS2.
DR   PANTHER; PTHR11655; PTHR11655; 1.
DR   Pfam; PF00347; Ribosomal_L6; 2.
DR   PIRSF; PIRSF002162; Ribosomal_L6; 1.
DR   SUPFAM; SSF56053; SSF56053; 2.
DR   PROSITE; PS00700; RIBOSOMAL_L6_2; 1.
PE   2: Evidence at transcript level;
KW   Reference proteome; Ribonucleoprotein; Ribosomal protein.
FT   CHAIN           1..190
FT                   /note="60S ribosomal protein L9"
FT                   /id="PRO_0000131107"
FT   CONFLICT        16
FT                   /note="V -> L (in Ref. 1; BAA19798)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        190
FT                   /note="A -> Q (in Ref. 7; BAA07209)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   190 AA;  21349 MW;  C68605FAF43DA121 CRC64;
     MKTILASETM EIPEGVTVQV AAKVVTVEGP RGKLTRNFKH LNLDFQLLEG GRKLQVDAWF
     GTRRTMAAIR TAISHVQNLI TGVTKGYRYK MRFVYAHFPI NASITNSNTA IEIRNFLGEK
     KVRKVDMLEG VTILRSEKVK DELVLDGNDI ELVSRSAALI NQKCHVKNKD IRKFLDGIYV
     SDKGTITEDA