RLP16_ARATH
ID RLP16_ARATH Reviewed; 302 AA.
AC F4HTV6; Q9C906;
DT 28-FEB-2018, integrated into UniProtKB/Swiss-Prot.
DT 28-JUN-2011, sequence version 1.
DT 03-AUG-2022, entry version 78.
DE RecName: Full=Putative receptor-like protein 16 {ECO:0000303|PubMed:18434605};
DE Short=AtRLP16 {ECO:0000303|PubMed:18434605};
GN Name=RLP16 {ECO:0000303|PubMed:18434605};
GN OrderedLocusNames=At1g74200 {ECO:0000312|Araport:AT1G74200};
GN ORFNames=F1O17.13 {ECO:0000312|EMBL:AAG52408.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY.
RX PubMed=15955925; DOI=10.1104/pp.104.054452;
RA Fritz-Laylin L.K., Krishnamurthy N., Toer M., Sjoelander K.V., Jones J.D.;
RT "Phylogenomic analysis of the receptor-like proteins of rice and
RT Arabidopsis.";
RL Plant Physiol. 138:611-623(2005).
RN [5]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18434605; DOI=10.1104/pp.108.119487;
RA Wang G., Ellendorff U., Kemp B., Mansfield J.W., Forsyth A., Mitchell K.,
RA Bastas K., Liu C.-M., Woods-Toer A., Zipfel C., de Wit P.J.G.M.,
RA Jones J.D.G., Toer M., Thomma B.P.H.J.;
RT "A genome-wide functional investigation into the roles of receptor-like
RT proteins in Arabidopsis.";
RL Plant Physiol. 147:503-517(2008).
CC -!- SIMILARITY: Belongs to the RLP family. {ECO:0000305}.
CC -!- CAUTION: Could be the product of a pseudogene. Lacks the signal peptide
CC and the transmembrane domain, which are conserved features of the
CC family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAG52408.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC020579; AAG52408.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE35565.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM59089.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM59090.1; -; Genomic_DNA.
DR EMBL; AF360276; -; NOT_ANNOTATED_CDS; mRNA.
DR PIR; C96770; C96770.
DR RefSeq; NP_001321481.1; NM_001334636.1.
DR RefSeq; NP_001321482.1; NM_001334637.1.
DR RefSeq; NP_177560.2; NM_106080.2.
DR AlphaFoldDB; F4HTV6; -.
DR SMR; F4HTV6; -.
DR IntAct; F4HTV6; 6.
DR STRING; 3702.AT1G74200.1; -.
DR iPTMnet; F4HTV6; -.
DR PaxDb; F4HTV6; -.
DR PRIDE; F4HTV6; -.
DR EnsemblPlants; AT1G74200.1; AT1G74200.1; AT1G74200.
DR EnsemblPlants; AT1G74200.2; AT1G74200.2; AT1G74200.
DR EnsemblPlants; AT1G74200.3; AT1G74200.3; AT1G74200.
DR GeneID; 843760; -.
DR Gramene; AT1G74200.1; AT1G74200.1; AT1G74200.
DR Gramene; AT1G74200.2; AT1G74200.2; AT1G74200.
DR Gramene; AT1G74200.3; AT1G74200.3; AT1G74200.
DR KEGG; ath:AT1G74200; -.
DR Araport; AT1G74200; -.
DR TAIR; locus:2019652; AT1G74200.
DR eggNOG; KOG0619; Eukaryota.
DR HOGENOM; CLU_000288_18_22_1; -.
DR InParanoid; F4HTV6; -.
DR OMA; NTQYIRI; -.
DR OrthoDB; 251930at2759; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; F4HTV6; baseline and differential.
DR Gene3D; 3.80.10.10; -; 1.
DR InterPro; IPR001611; Leu-rich_rpt.
DR InterPro; IPR032675; LRR_dom_sf.
DR Pfam; PF00560; LRR_1; 1.
DR Pfam; PF13855; LRR_8; 1.
PE 5: Uncertain;
KW Leucine-rich repeat; Receptor; Reference proteome; Repeat.
FT CHAIN 1..302
FT /note="Putative receptor-like protein 16"
FT /id="PRO_0000443479"
FT REPEAT 1..19
FT /note="LRR 1"
FT /evidence="ECO:0000255"
FT REPEAT 20..43
FT /note="LRR 2"
FT /evidence="ECO:0000255"
FT REPEAT 45..70
FT /note="LRR 3"
FT /evidence="ECO:0000255"
FT REPEAT 72..91
FT /note="LRR 4; degenerate"
FT /evidence="ECO:0000305"
FT REPEAT 92..115
FT /note="LRR 5"
FT /evidence="ECO:0000255"
FT REPEAT 116..140
FT /note="LRR 6"
FT /evidence="ECO:0000255"
FT REPEAT 142..164
FT /note="LRR 7"
FT /evidence="ECO:0000255"
FT REPEAT 166..188
FT /note="LRR 8"
FT /evidence="ECO:0000255"
FT REPEAT 190..211
FT /note="LRR 9"
FT /evidence="ECO:0000255"
FT REPEAT 213..234
FT /note="LRR 10"
FT /evidence="ECO:0000255"
FT REPEAT 235..258
FT /note="LRR 11"
FT /evidence="ECO:0000255"
SQ SEQUENCE 302 AA; 33464 MW; F07B5EA2E384EB8C CRC64;
MNLTTNGFQR NLPSSLGNME MIEFLDISHN SFHGKLPRSF LKGCDSLIVL KLSHKKLSEE
VFPEASNFFS ILELSMDNNL FTGKIGRGLQ SLRSLIMLDI SNNNLSGVIP SWFDQLQDLH
SLQISNNLLE GEVPISLFNM SSLQLLALSA NSLSGDLPQA ISGYGALKVL LLRDNNLSGV
IPDTLLGKNI IVLDLRNNRL SGNIPEFINT QYIRILLLRG NNLTGSIPRR LCAVRSIHLL
DLANNKLNGS IPSCLRNASL GLGRGGYIRR LFIIITFFLW EHLSVHFSNL CSCKMGLLSI
MS
