RLP24_ARATH
ID RLP24_ARATH Reviewed; 159 AA.
AC O22165; B9DGX5;
DT 27-SEP-2004, integrated into UniProtKB/Swiss-Prot.
DT 01-JAN-1998, sequence version 1.
DT 25-MAY-2022, entry version 126.
DE RecName: Full=Probable ribosome biogenesis protein RLP24;
GN OrderedLocusNames=At2g44860; ORFNames=T13E15.13;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=19423640; DOI=10.1093/dnares/dsp009;
RA Iida K., Fukami-Kobayashi K., Toyoda A., Sakaki Y., Kobayashi M., Seki M.,
RA Shinozaki K.;
RT "Analysis of multiple occurrences of alternative splicing events in
RT Arabidopsis thaliana using novel sequenced full-length cDNAs.";
RL DNA Res. 16:155-164(2009).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP INTERACTION WITH REIL1 AND REIL2.
RX PubMed=24603461; DOI=10.4161/psb.28224;
RA Schmidt S., Dethloff F., Beine-Golovchuk O., Kopka J.;
RT "REIL proteins of Arabidopsis thaliana interact in yeast-2-hybrid assays
RT with homologs of the yeast Rlp24, Rpl24A, Rlp24B, Arx1, and Jjj1
RT proteins.";
RL Plant Signal. Behav. 9:E28224-E28224(2014).
CC -!- FUNCTION: Involved in the biogenesis of the 60S ribosomal subunit.
CC Ensures the docking of NOG1 to pre-60S particles.
CC {ECO:0000250|UniProtKB:Q07915}.
CC -!- SUBUNIT: Associated with nucleolar and cytoplasmic pre-60S particles.
CC At the end of biogenesis it dissociates from cytoplasmic pre-60S
CC particles and is likely to be exchanged for its ribosomal homolog,
CC RPL24 (By similarity). Interacts with REIL1 AND REIL2
CC (PubMed:24603461). {ECO:0000250|UniProtKB:Q07915,
CC ECO:0000269|PubMed:24603461}.
CC -!- SUBCELLULAR LOCATION: Nucleus, nucleolus {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the eukaryotic ribosomal protein eL24 family.
CC {ECO:0000305}.
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DR EMBL; AC002388; AAC31838.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC10476.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC10477.1; -; Genomic_DNA.
DR EMBL; AY049251; AAK83593.1; -; mRNA.
DR EMBL; AY098951; AAM19961.1; -; mRNA.
DR EMBL; AK317317; BAH19992.1; -; mRNA.
DR EMBL; AY087358; AAM64908.1; -; mRNA.
DR PIR; T00407; T00407.
DR RefSeq; NP_001078059.1; NM_001084590.1.
DR RefSeq; NP_182013.1; NM_130050.4.
DR AlphaFoldDB; O22165; -.
DR SMR; O22165; -.
DR BioGRID; 4431; 1.
DR STRING; 3702.AT2G44860.1; -.
DR PaxDb; O22165; -.
DR PRIDE; O22165; -.
DR ProteomicsDB; 227982; -.
DR EnsemblPlants; AT2G44860.1; AT2G44860.1; AT2G44860.
DR EnsemblPlants; AT2G44860.2; AT2G44860.2; AT2G44860.
DR GeneID; 819095; -.
DR Gramene; AT2G44860.1; AT2G44860.1; AT2G44860.
DR Gramene; AT2G44860.2; AT2G44860.2; AT2G44860.
DR KEGG; ath:AT2G44860; -.
DR Araport; AT2G44860; -.
DR TAIR; locus:2054982; AT2G44860.
DR eggNOG; KOG1723; Eukaryota.
DR HOGENOM; CLU_089419_2_2_1; -.
DR InParanoid; O22165; -.
DR OMA; RERQFYK; -.
DR OrthoDB; 1502432at2759; -.
DR PhylomeDB; O22165; -.
DR PRO; PR:O22165; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; O22165; baseline and differential.
DR Genevisible; O22165; AT.
DR GO; GO:0022625; C:cytosolic large ribosomal subunit; HDA:TAIR.
DR GO; GO:0005730; C:nucleolus; HDA:TAIR.
DR GO; GO:0003735; F:structural constituent of ribosome; IDA:CAFA.
DR GO; GO:0042273; P:ribosomal large subunit biogenesis; IBA:GO_Central.
DR CDD; cd00472; Ribosomal_L24e_L24; 1.
DR Gene3D; 2.30.170.20; -; 1.
DR InterPro; IPR038630; L24e/L24_sf.
DR InterPro; IPR000988; Ribosomal_L24e-rel.
DR InterPro; IPR023442; Ribosomal_L24e_CS.
DR InterPro; IPR011017; TRASH_dom.
DR PANTHER; PTHR10792; PTHR10792; 1.
DR Pfam; PF01246; Ribosomal_L24e; 1.
DR SMART; SM00746; TRASH; 1.
DR PROSITE; PS01073; RIBOSOMAL_L24E; 1.
PE 1: Evidence at protein level;
KW Nucleus; Reference proteome; Ribosome biogenesis.
FT CHAIN 1..159
FT /note="Probable ribosome biogenesis protein RLP24"
FT /id="PRO_0000136903"
SQ SEQUENCE 159 AA; 18942 MW; 7F3F5EF7B66D4E94 CRC64;
MRLEKCWFCS STIYPGHGIQ FVRNDAKIFR FCRSKCHKNF KMKRNPRKVK WTKAFRAAHG
KDMTKDTTFE FEKKRNRPER YDRNVTENTL MAIKKIAKIR TAREAKHIEN RLKPNKQKKL
NDDMKELDQN IHMVQAPGAQ KIKVDVSEKK SVQNEAMEE
