RLP40_ARATH
ID RLP40_ARATH Reviewed; 883 AA.
AC Q9LRW9; F4J7T9; Q6NMK9;
DT 25-APR-2018, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 109.
DE RecName: Full=Receptor-like protein 40 {ECO:0000303|PubMed:18434605};
DE Short=AtRLP40 {ECO:0000303|PubMed:18434605};
DE Flags: Precursor;
GN Name=RLP40 {ECO:0000303|PubMed:18434605};
GN OrderedLocusNames=At3g24982 {ECO:0000312|Araport:AT3G24982};
GN ORFNames=K7P8.21 {ECO:0000312|EMBL:BAB02902.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10907853; DOI=10.1093/dnares/7.3.217;
RA Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence
RT features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC
RT clones.";
RL DNA Res. 7:217-221(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 639-883.
RC STRAIN=cv. Columbia;
RA Kim C.J., Chen H., Cheuk R.F., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (FEB-2004) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=15955925; DOI=10.1104/pp.104.054452;
RA Fritz-Laylin L.K., Krishnamurthy N., Toer M., Sjoelander K.V., Jones J.D.;
RT "Phylogenomic analysis of the receptor-like proteins of rice and
RT Arabidopsis.";
RL Plant Physiol. 138:611-623(2005).
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RC STRAIN=cv. Columbia;
RX PubMed=18434605; DOI=10.1104/pp.108.119487;
RA Wang G., Ellendorff U., Kemp B., Mansfield J.W., Forsyth A., Mitchell K.,
RA Bastas K., Liu C.-M., Woods-Toer A., Zipfel C., de Wit P.J.G.M.,
RA Jones J.D.G., Toer M., Thomma B.P.H.J.;
RT "A genome-wide functional investigation into the roles of receptor-like
RT proteins in Arabidopsis.";
RL Plant Physiol. 147:503-517(2008).
CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000305}; Single-pass type I
CC membrane protein {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the RLP family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAR24718.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC Sequence=AEE76963.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AB028609; BAB02902.1; -; Genomic_DNA.
DR EMBL; AP000412; BAB02902.1; JOINED; Genomic_DNA.
DR EMBL; CP002686; AEE76963.1; ALT_SEQ; Genomic_DNA.
DR EMBL; BT010940; AAR24718.1; ALT_INIT; mRNA.
DR EMBL; BT011648; AAS47654.1; -; mRNA.
DR RefSeq; NP_566757.2; NM_113404.3.
DR AlphaFoldDB; Q9LRW9; -.
DR SMR; Q9LRW9; -.
DR STRING; 3702.AT3G24982.1; -.
DR PRIDE; Q9LRW9; -.
DR ProteomicsDB; 227990; -.
DR GeneID; 822091; -.
DR KEGG; ath:AT3G24982; -.
DR Araport; AT3G24982; -.
DR TAIR; locus:2829370; AT3G24982.
DR eggNOG; KOG0619; Eukaryota.
DR HOGENOM; CLU_000288_18_3_1; -.
DR OrthoDB; 303561at2759; -.
DR PhylomeDB; Q9LRW9; -.
DR PRO; PR:Q9LRW9; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LRW9; baseline and differential.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
DR Gene3D; 3.80.10.10; -; 5.
DR InterPro; IPR001611; Leu-rich_rpt.
DR InterPro; IPR003591; Leu-rich_rpt_typical-subtyp.
DR InterPro; IPR032675; LRR_dom_sf.
DR InterPro; IPR045273; RLP23-like.
DR PANTHER; PTHR27004; PTHR27004; 1.
DR Pfam; PF00560; LRR_1; 3.
DR Pfam; PF13855; LRR_8; 2.
DR SMART; SM00369; LRR_TYP; 8.
PE 2: Evidence at transcript level;
KW Cell membrane; Glycoprotein; Leucine-rich repeat; Membrane; Receptor;
KW Reference proteome; Repeat; Signal; Transmembrane; Transmembrane helix.
FT SIGNAL 1..21
FT /evidence="ECO:0000255"
FT CHAIN 22..883
FT /note="Receptor-like protein 40"
FT /id="PRO_5004329261"
FT TOPO_DOM 22..846
FT /note="Extracellular"
FT /evidence="ECO:0000255"
FT TRANSMEM 847..867
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 868..883
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT REPEAT 97..121
FT /note="LRR 1"
FT /evidence="ECO:0000255"
FT REPEAT 122..143
FT /note="LRR 2"
FT /evidence="ECO:0000255"
FT REPEAT 146..169
FT /note="LRR 3"
FT /evidence="ECO:0000255"
FT REPEAT 170..195
FT /note="LRR 4"
FT /evidence="ECO:0000255"
FT REPEAT 197..219
FT /note="LRR 5"
FT /evidence="ECO:0000255"
FT REPEAT 220..244
FT /note="LRR 6"
FT /evidence="ECO:0000255"
FT REPEAT 246..267
FT /note="LRR 7"
FT /evidence="ECO:0000255"
FT REPEAT 268..291
FT /note="LRR 8"
FT /evidence="ECO:0000255"
FT REPEAT 293..316
FT /note="LRR 9"
FT /evidence="ECO:0000255"
FT REPEAT 317..340
FT /note="LRR 10"
FT /evidence="ECO:0000255"
FT REPEAT 342..364
FT /note="LRR 11"
FT /evidence="ECO:0000255"
FT REPEAT 365..390
FT /note="LRR 12"
FT /evidence="ECO:0000255"
FT REPEAT 391..412
FT /note="LRR 13"
FT /evidence="ECO:0000255"
FT REPEAT 413..437
FT /note="LRR 14"
FT /evidence="ECO:0000255"
FT REPEAT 439..462
FT /note="LRR 15"
FT /evidence="ECO:0000255"
FT REPEAT 463..486
FT /note="LRR 16"
FT /evidence="ECO:0000255"
FT REPEAT 487..506
FT /note="LRR 17; degenerate"
FT /evidence="ECO:0000305"
FT REPEAT 507..528
FT /note="LRR 18"
FT /evidence="ECO:0000255"
FT REPEAT 529..552
FT /note="LRR 19"
FT /evidence="ECO:0000255"
FT REPEAT 554..576
FT /note="LRR 20"
FT /evidence="ECO:0000255"
FT REPEAT 578..600
FT /note="LRR 21"
FT /evidence="ECO:0000255"
FT REPEAT 601..624
FT /note="LRR 22"
FT /evidence="ECO:0000255"
FT REPEAT 627..651
FT /note="LRR 23"
FT /evidence="ECO:0000255"
FT REPEAT 701..724
FT /note="LRR 24"
FT /evidence="ECO:0000255"
FT REPEAT 725..747
FT /note="LRR 25"
FT /evidence="ECO:0000255"
FT REPEAT 748..772
FT /note="LRR 26"
FT /evidence="ECO:0000255"
FT REPEAT 774..797
FT /note="LRR 27"
FT /evidence="ECO:0000255"
FT CARBOHYD 58
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 91
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 109
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 145
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 189
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 207
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 243
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 266
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 305
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 312
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 352
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 462
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 506
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 519
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 575
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 731
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 779
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
SQ SEQUENCE 883 AA; 97590 MW; 8202A333AF193937 CRC64;
MSELLFSLNF LLLLLLSCVS PSSFFTFNNP VVGLGACGPH QIQAFTQFKN EFDTRACNHS
DPWNGVWCDD STGAVTMLQL RACLSGTLKP NSSLFQFHHL RSLLLPHNNF TSSSISSKFG
MLNNLEVLSL SSSGFLAQVP FSFSNLSMLS ALVLSNNDLT GSLSFARNLR KLRVLDVSYN
HFSGILNPNS SLFELHHIIY LNLRYNNFTS SSLPYEFGNL NKLEVLDVSS NSFFGQVPPT
ISNLTQLTEL YLPLNHFTGS LPLVQNLTKL SILHLFGNHF SGTIPSSLFT MPFLSYLSLK
GNNLNGSIEV PNSSSSSRLE SLHLGENHFE GKILEPISKL INLKELDLSF LNTSYPIDLS
LFSSLKSLLL LDLSGDWISK ASLTLDSYIP STLEVLRLEH CDISDFPNVF KTLHNLEYIA
LSNNRISGKF PEWLWSLPRL SSVFITDNLL TGFEGSSEVL VNSSVQILSL DTNSLEGALP
HLPLSINYFS AIDNRFGGDI PLSICNRSSL DVLDLSYNNF TGPIPPCLSN LLYLKLRKNN
LEGSIPDKYY EDTPLRSLDV GYNRLTGKLP RSLINCSALQ FLSVDHNGIK DTFPFSLKAL
PKLQVLLLSS NKFYGPLSPP NEGPLGFPEL RILEIAGNKL TGSLSSDFFV NWKASSHTMN
EDLGLYMVYG KVIFGNYHLT YYETIDLRYK GLSMEQRNVL TSSATIDFSG NRLEGEIPES
IGLLKALIAL NLSNNAFTGH IPLSFANLKK MESLDLSSNQ LSGTIPNGLR TLSFLAYVNV
SHNQLIGEIP QGTQITGQPK SSFEGNAGLC GFPLQESCFG TNTPPAQHPK EQEEEEEDEQ
VLNWKAVAIG YGIGVLLGLA IAQLISLYKP KWLASLVIKS RNC
