RLP56_ARATH
ID RLP56_ARATH Reviewed; 947 AA.
AC F4K4T3; A0A1P8BAV1; Q56WY0; Q9FJ11;
DT 23-MAY-2018, integrated into UniProtKB/Swiss-Prot.
DT 23-MAY-2018, sequence version 2.
DT 03-AUG-2022, entry version 76.
DE RecName: Full=Receptor-like protein 56 {ECO:0000303|PubMed:18434605};
DE Short=AtRLP56 {ECO:0000303|PubMed:18434605};
DE Flags: Precursor;
GN Name=RLP56 {ECO:0000303|PubMed:18434605};
GN OrderedLocusNames=At5g49290 {ECO:0000312|Araport:AT5G49290};
GN ORFNames=K21P3.17 {ECO:0000312|EMBL:BAB10347.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10048488; DOI=10.1093/dnares/5.6.379;
RA Asamizu E., Sato S., Kaneko T., Nakamura Y., Kotani H., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. VIII. Sequence
RT features of the regions of 1,081,958 bp covered by seventeen physically
RT assigned P1 and TAC clones.";
RL DNA Res. 5:379-391(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 336-580 (ISOFORM 1).
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY.
RX PubMed=15955925; DOI=10.1104/pp.104.054452;
RA Fritz-Laylin L.K., Krishnamurthy N., Toer M., Sjoelander K.V., Jones J.D.;
RT "Phylogenomic analysis of the receptor-like proteins of rice and
RT Arabidopsis.";
RL Plant Physiol. 138:611-623(2005).
RN [5]
RP GENE FAMILY, AND NOMENCLATURE.
RC STRAIN=cv. Columbia;
RX PubMed=18434605; DOI=10.1104/pp.108.119487;
RA Wang G., Ellendorff U., Kemp B., Mansfield J.W., Forsyth A., Mitchell K.,
RA Bastas K., Liu C.-M., Woods-Toer A., Zipfel C., de Wit P.J.G.M.,
RA Jones J.D.G., Toer M., Thomma B.P.H.J.;
RT "A genome-wide functional investigation into the roles of receptor-like
RT proteins in Arabidopsis.";
RL Plant Physiol. 147:503-517(2008).
CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000305}; Single-pass type I
CC membrane protein {ECO:0000305}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=F4K4T3-1; Sequence=Displayed;
CC Name=2;
CC IsoId=F4K4T3-2; Sequence=VSP_059575;
CC -!- SIMILARITY: Belongs to the RLP family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AED95793.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC Sequence=BAB10347.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAD94265.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC Sequence=BAD94265.1; Type=Frameshift; Evidence={ECO:0000305};
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DR EMBL; AB016872; BAB10347.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002688; AED95793.1; ALT_INIT; Genomic_DNA.
DR EMBL; CP002688; ANM68731.1; -; Genomic_DNA.
DR EMBL; AK221899; BAD94265.1; ALT_SEQ; mRNA.
DR RefSeq; NP_001330457.1; NM_001344828.1. [F4K4T3-1]
DR RefSeq; NP_199740.4; NM_124306.5.
DR AlphaFoldDB; F4K4T3; -.
DR SMR; F4K4T3; -.
DR STRING; 3702.AT5G49290.1; -.
DR PaxDb; F4K4T3; -.
DR PRIDE; F4K4T3; -.
DR EnsemblPlants; AT5G49290.2; AT5G49290.2; AT5G49290. [F4K4T3-1]
DR GeneID; 834989; -.
DR Gramene; AT5G49290.2; AT5G49290.2; AT5G49290. [F4K4T3-1]
DR KEGG; ath:AT5G49290; -.
DR Araport; AT5G49290; -.
DR TAIR; locus:2155909; AT5G49290.
DR eggNOG; KOG0619; Eukaryota.
DR HOGENOM; CLU_000288_18_3_1; -.
DR InParanoid; F4K4T3; -.
DR OrthoDB; 826997at2759; -.
DR PRO; PR:F4K4T3; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; F4K4T3; baseline and differential.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
DR Gene3D; 3.80.10.10; -; 5.
DR InterPro; IPR001611; Leu-rich_rpt.
DR InterPro; IPR025875; Leu-rich_rpt_4.
DR InterPro; IPR003591; Leu-rich_rpt_typical-subtyp.
DR InterPro; IPR032675; LRR_dom_sf.
DR InterPro; IPR013210; LRR_N_plant-typ.
DR Pfam; PF00560; LRR_1; 1.
DR Pfam; PF12799; LRR_4; 1.
DR Pfam; PF13855; LRR_8; 2.
DR Pfam; PF08263; LRRNT_2; 1.
DR SMART; SM00369; LRR_TYP; 11.
DR PROSITE; PS51450; LRR; 19.
PE 2: Evidence at transcript level;
KW Alternative splicing; Cell membrane; Glycoprotein; Leucine-rich repeat;
KW Membrane; Receptor; Reference proteome; Repeat; Signal; Transmembrane;
KW Transmembrane helix.
FT SIGNAL 1..27
FT /evidence="ECO:0000255"
FT CHAIN 28..947
FT /note="Receptor-like protein 56"
FT /id="PRO_0000444116"
FT TOPO_DOM 28..899
FT /note="Extracellular"
FT /evidence="ECO:0000255"
FT TRANSMEM 900..920
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 921..947
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT REPEAT 105..128
FT /note="LRR 1"
FT /evidence="ECO:0000255"
FT REPEAT 134..157
FT /note="LRR 2"
FT /evidence="ECO:0000255"
FT REPEAT 159..182
FT /note="LRR 3"
FT /evidence="ECO:0000255"
FT REPEAT 183..207
FT /note="LRR 4"
FT /evidence="ECO:0000255"
FT REPEAT 209..232
FT /note="LRR 5"
FT /evidence="ECO:0000255"
FT REPEAT 233..257
FT /note="LRR 6"
FT /evidence="ECO:0000255"
FT REPEAT 259..281
FT /note="LRR 7"
FT /evidence="ECO:0000255"
FT REPEAT 282..305
FT /note="LRR 8"
FT /evidence="ECO:0000255"
FT REPEAT 307..330
FT /note="LRR 9"
FT /evidence="ECO:0000255"
FT REPEAT 332..356
FT /note="LRR 10; degenerate"
FT /evidence="ECO:0000305"
FT REPEAT 357..380
FT /note="LRR 11"
FT /evidence="ECO:0000255"
FT REPEAT 381..404
FT /note="LRR 12"
FT /evidence="ECO:0000255"
FT REPEAT 405..427
FT /note="LRR 13"
FT /evidence="ECO:0000255"
FT REPEAT 428..450
FT /note="LRR 14"
FT /evidence="ECO:0000255"
FT REPEAT 452..476
FT /note="LRR 15"
FT /evidence="ECO:0000255"
FT REPEAT 477..500
FT /note="LRR 16"
FT /evidence="ECO:0000255"
FT REPEAT 502..527
FT /note="LRR 17"
FT /evidence="ECO:0000255"
FT REPEAT 529..549
FT /note="LRR 18"
FT /evidence="ECO:0000255"
FT REPEAT 550..575
FT /note="LRR 19"
FT /evidence="ECO:0000255"
FT REPEAT 577..598
FT /note="LRR 20"
FT /evidence="ECO:0000255"
FT REPEAT 600..616
FT /note="LRR 21"
FT /evidence="ECO:0000255"
FT REPEAT 617..640
FT /note="LRR 22"
FT /evidence="ECO:0000255"
FT REPEAT 642..663
FT /note="LRR 23"
FT /evidence="ECO:0000255"
FT REPEAT 664..686
FT /note="LRR 24"
FT /evidence="ECO:0000255"
FT REPEAT 757..780
FT /note="LRR 25"
FT /evidence="ECO:0000255"
FT REPEAT 781..804
FT /note="LRR 26"
FT /evidence="ECO:0000255"
FT REPEAT 805..829
FT /note="LRR 27"
FT /evidence="ECO:0000255"
FT REPEAT 831..854
FT /note="LRR 28"
FT /evidence="ECO:0000255"
FT CARBOHYD 60
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 75
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 98
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 141
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 148
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 182
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 232
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 330
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 415
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 459
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 478
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 488
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 524
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 606
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 686
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 788
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 828
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 836
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT CARBOHYD 841
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT VAR_SEQ 229..253
FT /note="Missing (in isoform 2)"
FT /id="VSP_059575"
SQ SEQUENCE 947 AA; 106743 MW; 4F800B51B19F2EEA CRC64;
MEGKVFSGQK LILVMLLLGH LHGFSSCIEK ERKALLELKK FVMSRCEECE YDSVLPTWTN
DTKSDCCQWE NIKCNRTSRR LTGLSLYTSY YLEISLLNLS LLHPFEEVRS LDLSNSRLNG
LVDDVEGYKS LRRLRNLQIL NFSSNEFNNS IFPFLNAATS LTTLSLRRNN MYGPIPLKEL
KNLTNLELLD LSGNRIDGSM PVREFPYLKK LKALDLSSNG IYSSMEWQGL KNLTNLEVLS
LGYNYFDGPI PIEVFCEMKN LQELDLRGIN FVGQLPLCFG NLNKLRFLDL SSNQLTGNIP
PSFSSLESLE YLSLSDNSFE GFFSLNPLTN LTKLKVFIFS SKDDMVQVKI ESTWQPLFQL
SVLVLRLCSL EKIPNFLMYQ KNLHVVDLSG NRISGIIPTW LLENNPELEV LQLKNNSFTI
FQMPTSVHNL QVLDFSENNI GGLFPDNFGR VLPNLVHMNG SNNGFQGNFP SSMGEMYNIS
FLDLSYNNLS GELPQSFVSS CFSLSILQLS HNKFSGHFLP RQTNFTSLIV LRINNNLFTG
KIGVGLLTLV DLCILDMSNN FLEGELPPLL LVFEYLNFLD LSGNLLSGAL PSHVSLDNVL
FLHNNNFTGP IPDTFLGSIQ ILDLRNNKLS GNIPQFVDTQ DISFLLLRGN SLTGYIPSTL
CEFSKMRLLD LSDNKLNGFI PSCFNNLSFG LARKEEITNY YVAVALESFY LGFYKSTFVV
ENFRLDYSNY FEIDVKFATK QRYDSYIGAF QFSEGTLNSM YGLDLSSNEL SGVIPAELGD
LFKLRALNLS HNFLSSHIPD SFSKLQDIES LDLSYNMLQG SIPHQLTNLT SLAIFNVSYN
NLSGIIPQGK QFNTFDENSY LGNPLLCGPP TDTSCETKKN SEENANGGEE DDKEVAIDML
VFYWSTAGTY VTALIGILVL MCVDCSWRRA WLRLVDAFIA SAKSKLA
