RM05_ARATH
ID RM05_ARATH Reviewed; 185 AA.
AC P42793; P93288; Q33886; Q8S8I8;
DT 01-NOV-1995, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1995, sequence version 1.
DT 03-AUG-2022, entry version 153.
DE RecName: Full=60S ribosomal protein L5, mitochondrial;
GN Name=RPL5; OrderedLocusNames=AtMg00210;
OS Arabidopsis thaliana (Mouse-ear cress).
OG Mitochondrion.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND RNA EDITING.
RC STRAIN=cv. Columbia;
RX PubMed=7916674; DOI=10.1007/bf00336785;
RA Brandt P., Unseld M., Eckert-Ossenkopp U., Brennicke A.;
RT "An rps14 pseudogene is transcribed and edited in Arabidopsis
RT mitochondria.";
RL Curr. Genet. 24:330-336(1993).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. C24;
RX PubMed=8988169; DOI=10.1038/ng0197-57;
RA Unseld M., Marienfeld J.R., Brandt P., Brennicke A.;
RT "The mitochondrial genome of Arabidopsis thaliana contains 57 genes in
RT 366,924 nucleotides.";
RL Nat. Genet. 15:57-61(1997).
RN [3]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND RNA EDITING.
RX PubMed=10611383; DOI=10.1073/pnas.96.26.15324;
RA Giege P., Brennicke A.;
RT "RNA editing in Arabidopsis mitochondria effects 441 C to U changes in
RT ORFs.";
RL Proc. Natl. Acad. Sci. U.S.A. 96:15324-15329(1999).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (AT2G07725).
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (AT2G07725).
RC STRAIN=cv. Columbia;
RA Shinn P., Chen H., Cheuk R.F., Kim C.J., Ecker J.R.;
RT "Arabidopsis cDNA clones.";
RL Submitted (NOV-2003) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 92-185.
RC STRAIN=cv. Columbia;
RX PubMed=1463850; DOI=10.1007/bf00028903;
RA Aubert D., Bisanz-Seyer C., Herzog M.;
RT "Mitochondrial rps14 is a transcribed and edited pseudogene in Arabidopsis
RT thaliana.";
RL Plant Mol. Biol. 20:1169-1174(1992).
CC -!- SUBCELLULAR LOCATION: Mitochondrion.
CC -!- RNA EDITING: Modified_positions=12 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:7916674}, 16 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:7916674}, 20 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:7916674}, 22 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:7916674}, 31 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:7916674}, 57 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:7916674}, 106 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:7916674}, 110 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:7916674}, 171 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:7916674};
CC -!- MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is
CC duplicated within the centromere of chromosome 2 resulting in the
CC duplication of the gene. The expression of this duplicated gene
CC (At2g07725) is demonstrated.
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uL5 family.
CC {ECO:0000305}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; X67736; CAA47967.1; ALT_SEQ; Genomic_DNA.
DR EMBL; Y08501; CAA69765.3; ALT_SEQ; Genomic_DNA.
DR EMBL; AC006225; AAM15173.1; ALT_SEQ; Genomic_DNA.
DR EMBL; BT010679; AAR20736.1; ALT_SEQ; mRNA.
DR EMBL; X65123; CAA46239.1; ALT_SEQ; Genomic_DNA.
DR PIR; S38959; S38959.
DR RefSeq; NP_085491.1; NC_001284.2.
DR RefSeq; NP_178803.1; NM_126761.2.
DR PDB; 6XYW; EM; 3.86 A; Ae=1-185.
DR PDBsum; 6XYW; -.
DR AlphaFoldDB; P42793; -.
DR SMR; P42793; -.
DR IntAct; P42793; 1.
DR STRING; 3702.AT2G07725.1; -.
DR PaxDb; P42793; -.
DR PeptideAtlas; P42793; -.
DR PRIDE; P42793; -.
DR GeneID; 815398; -.
DR KEGG; ath:AT2G07725; -.
DR Araport; ATMG00210; -.
DR eggNOG; ENOG502QT6Q; Eukaryota.
DR OrthoDB; 1295007at2759; -.
DR PRO; PR:P42793; -.
DR Proteomes; UP000006548; Mitochondrion (cv. C24).
DR GO; GO:0022625; C:cytosolic large ribosomal subunit; IBA:GO_Central.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0003735; F:structural constituent of ribosome; IBA:GO_Central.
DR GO; GO:0006412; P:translation; IEA:InterPro.
DR Gene3D; 3.30.1440.10; -; 1.
DR InterPro; IPR002132; Ribosomal_L5.
DR InterPro; IPR022803; Ribosomal_L5_dom_sf.
DR PANTHER; PTHR11994; PTHR11994; 1.
DR PIRSF; PIRSF002161; Ribosomal_L5; 1.
DR SUPFAM; SSF55282; SSF55282; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Mitochondrion; Reference proteome; Ribonucleoprotein;
KW Ribosomal protein; RNA editing.
FT CHAIN 1..185
FT /note="60S ribosomal protein L5, mitochondrial"
FT /id="PRO_0000125073"
FT CONFLICT 92..98
FT /note="ARQSTLR -> STTKHSP (in Ref. 6)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 185 AA; 21235 MW; CB934DC964D9117F CRC64;
MFPLNFHYED VLRQDLLLKL NYANVMEVPG LCEIRVVPKA PYNFIIKNGK LAMEIPCGQK
FIQTQRGSTG KSFRSNPFLG SNKDKGYVSD LARQSTLRGH GMSNFLVRIL TVMSLLDFPV
EIRKNSIQFS METEFCEFSP ELEDHFEIFE HIRGFNVTII TSANTQDETL LLWSGFLQKD
EGETQ
