RNC1_ORYSJ
ID RNC1_ORYSJ Reviewed; 533 AA.
AC Q8S1Z0;
DT 17-FEB-2016, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2002, sequence version 1.
DT 03-AUG-2022, entry version 128.
DE RecName: Full=Ribonuclease III domain-containing protein RNC1, chloroplastic {ECO:0000305};
DE AltName: Full=Chloroplast ribonuclease III domain protein {ECO:0000305};
DE Flags: Precursor;
GN Name=RNC1 {ECO:0000305};
GN OrderedLocusNames=Os01g0810100 {ECO:0000312|EMBL:BAF06495.1};
GN ORFNames=OSNPB_010810100 {ECO:0000312|EMBL:BAS74865.1},
GN P0468B07.33 {ECO:0000312|EMBL:BAB89639.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000312|Proteomes:UP000059680};
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Binds specific group II introns in chloroplasts and
CC facilitates their splicing. Acts on both subgroup IIA and subgroup IIB
CC introns. The substrates of the subgroup II also require the CRM domain
CC proteins CAF1 or CAF2. Binds both single-stranded and double-stranded
CC RNA non-specifically, but lacks endonuclease activity. Required for
CC plastid ribosome biogenesis. {ECO:0000250|UniProtKB:A6YSL1}.
CC -!- SUBUNIT: Interacts with RNA. Part of large ribonucleo-protein particles
CC that contain CAF1 and/or CAF2. {ECO:0000250|UniProtKB:A6YSL1}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000255}.
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DR EMBL; AP003260; BAB89639.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF06495.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS74865.1; -; Genomic_DNA.
DR EMBL; AK071916; BAG92754.1; -; mRNA.
DR EMBL; AK099056; BAG93898.1; -; mRNA.
DR RefSeq; XP_015648830.1; XM_015793344.1.
DR AlphaFoldDB; Q8S1Z0; -.
DR STRING; 4530.OS01T0810100-01; -.
DR PaxDb; Q8S1Z0; -.
DR PRIDE; Q8S1Z0; -.
DR EnsemblPlants; Os01t0810100-01; Os01t0810100-01; Os01g0810100.
DR EnsemblPlants; Os01t0810100-02; Os01t0810100-02; Os01g0810100.
DR GeneID; 4327567; -.
DR Gramene; Os01t0810100-01; Os01t0810100-01; Os01g0810100.
DR Gramene; Os01t0810100-02; Os01t0810100-02; Os01g0810100.
DR KEGG; osa:4327567; -.
DR eggNOG; ENOG502QSFE; Eukaryota.
DR HOGENOM; CLU_018164_0_0_1; -.
DR InParanoid; Q8S1Z0; -.
DR OMA; AVANCWW; -.
DR OrthoDB; 470747at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003725; F:double-stranded RNA binding; IBA:GO_Central.
DR GO; GO:0004525; F:ribonuclease III activity; IBA:GO_Central.
DR GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR GO; GO:0010468; P:regulation of gene expression; IBA:GO_Central.
DR GO; GO:0006396; P:RNA processing; IBA:GO_Central.
DR GO; GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
DR GO; GO:0006364; P:rRNA processing; IEA:InterPro.
DR CDD; cd00593; RIBOc; 2.
DR Gene3D; 1.10.1520.10; -; 2.
DR InterPro; IPR011907; RNase_III.
DR InterPro; IPR000999; RNase_III_dom.
DR InterPro; IPR036389; RNase_III_sf.
DR PANTHER; PTHR11207; PTHR11207; 1.
DR SMART; SM00535; RIBOc; 1.
DR SUPFAM; SSF69065; SSF69065; 2.
DR PROSITE; PS50142; RNASE_3_2; 1.
PE 2: Evidence at transcript level;
KW Chloroplast; mRNA processing; mRNA splicing; Plastid; Reference proteome;
KW Repeat; Ribonucleoprotein; RNA-binding; Transit peptide.
FT TRANSIT 1..30
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 31..533
FT /note="Ribonuclease III domain-containing protein RNC1,
FT chloroplastic"
FT /id="PRO_0000435538"
FT DOMAIN 164..279
FT /note="RNase III 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00177"
FT DOMAIN 411..511
FT /note="RNase III 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00177"
FT REGION 31..57
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 66..85
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 37..53
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 533 AA; 61628 MW; 68B7B935815E0251 CRC64;
MAPPAMAFQA LALGPLPLPL PAARRRRRVR VLAVAADHTP PPPPSPSSPP EPANSPSRLL
RELAERKKAV SPKKKHPPRR FILKPPLDDE RLTQRFLSSP QLSLKALPLL SSCLPSAPLS
AADRTWMDEY LLEAKQALGY PLAPSETLGD GDDDGCPARH FDVLLYLAFQ HLDTSCERTR
TRHVRSGHSR LWFLGQYVLE LAFCEFFLQR YPRESPGPMR ERVFALIGKR AIPKWIKAAS
LHNLVFPYDD LDKMIRKDRE PPAKAVFWAL FGAIYLCFGM PEVYRVLFEA FGMDPEDESC
QPKLRRQLED VDYVSVEFEK RQLTWQDVAA YRPPPDALFA HPRLFRACVP PGMHRFRGNI
WDFDNRPKVM NTLGYPLPMN DRIPEITEAR NIELGLGLQL CFLHPSKHKF EHPRFCLERL
EYVGQKIQDL VMAERLLMKH LDAPGRWLAE KHRRLLMNKY CGRYLRDKHL HHYIIYGESV
QDRFEHNRRL RNPSTTAVQQ AIHGLAYCVY GKPDVRRLMF EVFDFEQVQP KAV
