AB1F_ARATH
ID AB1F_ARATH Reviewed; 595 AA.
AC Q9FJH6; B9DHL7; B9DHY2;
DT 07-JUL-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 143.
DE RecName: Full=ABC transporter F family member 1;
DE Short=ABC transporter ABCF.1;
DE Short=AtABCF1;
DE AltName: Full=GCN20-type ATP-binding cassette protein GCN1;
GN Name=ABCF1; Synonyms=GCN1; OrderedLocusNames=At5g60790; ORFNames=MAE1.10;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9872454; DOI=10.1093/dnares/5.5.297;
RA Nakamura Y., Sato S., Asamizu E., Kaneko T., Kotani H., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. VII. Sequence
RT features of the regions of 1,013,767 bp covered by sixteen physically
RT assigned P1 and TAC clones.";
RL DNA Res. 5:297-308(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 108-595.
RC STRAIN=cv. Columbia;
RX PubMed=19423640; DOI=10.1093/dnares/dsp009;
RA Iida K., Fukami-Kobayashi K., Toyoda A., Sakaki Y., Kobayashi M., Seki M.,
RA Shinozaki K.;
RT "Analysis of multiple occurrences of alternative splicing events in
RT Arabidopsis thaliana using novel sequenced full-length cDNAs.";
RL DNA Res. 16:155-164(2009).
RN [5]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=11346655; DOI=10.1074/jbc.m103104200;
RA Sanchez-Fernandez R., Davies T.G., Coleman J.O., Rea P.A.;
RT "The Arabidopsis thaliana ABC protein superfamily, a complete inventory.";
RL J. Biol. Chem. 276:30231-30244(2001).
RN [6]
RP GENE FAMILY.
RX PubMed=11855639; DOI=10.1007/s004250100661;
RA Martinoia E., Klein M., Geisler M., Bovet L., Forestier C.,
RA Kolukisaoglu H.U., Mueller-Roeber B., Schulz B.;
RT "Multifunctionality of plant ABC transporters -- more than just
RT detoxifiers.";
RL Planta 214:345-355(2002).
RN [7]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18299247; DOI=10.1016/j.tplants.2008.02.001;
RA Verrier P.J., Bird D., Burla B., Dassa E., Forestier C., Geisler M.,
RA Klein M., Kolukisaoglu H.U., Lee Y., Martinoia E., Murphy A., Rea P.A.,
RA Samuels L., Schulz B., Spalding E.J., Yazaki K., Theodoulou F.L.;
RT "Plant ABC proteins - a unified nomenclature and updated inventory.";
RL Trends Plant Sci. 13:151-159(2008).
CC -!- SIMILARITY: Belongs to the ABC transporter superfamily. ABCF family.
CC EF3 (TC 3.A.1.121) subfamily. {ECO:0000305}.
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DR EMBL; AB015472; BAB10100.1; -; Genomic_DNA.
DR EMBL; CP002688; AED97377.1; -; Genomic_DNA.
DR EMBL; AY140066; AAM98207.1; -; mRNA.
DR EMBL; BT000946; AAN41346.1; -; mRNA.
DR EMBL; BT008363; AAP37722.1; -; mRNA.
DR EMBL; AK317570; BAH20234.1; -; mRNA.
DR EMBL; AK317690; BAH20349.1; -; mRNA.
DR RefSeq; NP_200887.1; NM_125472.3.
DR AlphaFoldDB; Q9FJH6; -.
DR SMR; Q9FJH6; -.
DR BioGRID; 21444; 3.
DR IntAct; Q9FJH6; 1.
DR STRING; 3702.AT5G60790.1; -.
DR TCDB; 3.A.1.121.10; the atp-binding cassette (abc) superfamily.
DR iPTMnet; Q9FJH6; -.
DR MetOSite; Q9FJH6; -.
DR PaxDb; Q9FJH6; -.
DR PRIDE; Q9FJH6; -.
DR ProteomicsDB; 244601; -.
DR EnsemblPlants; AT5G60790.1; AT5G60790.1; AT5G60790.
DR GeneID; 836200; -.
DR Gramene; AT5G60790.1; AT5G60790.1; AT5G60790.
DR KEGG; ath:AT5G60790; -.
DR Araport; AT5G60790; -.
DR TAIR; locus:2159300; AT5G60790.
DR eggNOG; KOG0927; Eukaryota.
DR HOGENOM; CLU_000604_36_6_1; -.
DR InParanoid; Q9FJH6; -.
DR OMA; DKMFLDN; -.
DR OrthoDB; 580544at2759; -.
DR PhylomeDB; Q9FJH6; -.
DR PRO; PR:Q9FJH6; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FJH6; baseline and differential.
DR Genevisible; Q9FJH6; AT.
DR GO; GO:0009536; C:plastid; HDA:TAIR.
DR GO; GO:0005524; F:ATP binding; IBA:GO_Central.
DR Gene3D; 3.40.50.300; -; 2.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR032781; ABC_tran_Xtn.
DR InterPro; IPR003439; ABC_transporter-like_ATP-bd.
DR InterPro; IPR017871; ABC_transporter-like_CS.
DR InterPro; IPR027417; P-loop_NTPase.
DR Pfam; PF00005; ABC_tran; 2.
DR Pfam; PF12848; ABC_tran_Xtn; 1.
DR SMART; SM00382; AAA; 2.
DR SUPFAM; SSF52540; SSF52540; 2.
DR PROSITE; PS00211; ABC_TRANSPORTER_1; 1.
DR PROSITE; PS50893; ABC_TRANSPORTER_2; 2.
PE 2: Evidence at transcript level;
KW ATP-binding; Nucleotide-binding; Reference proteome; Repeat; Transport.
FT CHAIN 1..595
FT /note="ABC transporter F family member 1"
FT /id="PRO_0000379139"
FT DOMAIN 69..309
FT /note="ABC transporter 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00434"
FT DOMAIN 380..595
FT /note="ABC transporter 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00434"
FT REGION 1..41
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 101..108
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00434"
FT BINDING 413..420
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00434"
FT CONFLICT 209
FT /note="K -> R (in Ref. 4; BAH20234)"
FT /evidence="ECO:0000305"
FT CONFLICT 226
FT /note="A -> G (in Ref. 4; BAH20234)"
FT /evidence="ECO:0000305"
FT CONFLICT 359
FT /note="V -> I (in Ref. 4; BAH20349)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 595 AA; 66886 MW; 745CAD7DA596A506 CRC64;
MVSDASKKKA AQKKAAAAAK RGGKAAAPSK SAATSSNGVD SLSSGVDALQ ISDRTCTGVL
CSHPQSRDIR IESLSVTFHG YDLIVDSMLE LNYGRRYGLL GLNGCGKSTL LTAIGRREIP
IPDQMDIYHL SHEIEATDMS SLEAVVSCDE ERLRLEKEVE ILVQQDDGGG ERLQSIYERL
DAMDAETAEK RAAEILFGLG FDKEMQAKKT KDFSGGWRMR IALARALFIM PTILLLDEPT
NHLDLEACVW LEESLKNFDR ILVVVSHSQD FLNGVCTNII HMQSKQLKYY TGNFDQYCQT
RSELEENQMK QYRWEQEQIS HMKEYIARFG HGSAKLARQA QSKEKTLAKM ERGGLTEKVA
RDSVLVFRFA DVGKLPPPVL QFVEVSFGYT PDYLIYKNID FGVDLDSRVA LVGPNGAGKS
TLLKLMTGEL HPTEGMVRRH NHLKIAQYHQ HLAEKLDLEL PALLYMMREF PGTEEEKMRA
AIGRFGLTGK AQVMPMKNLS DGQRSRVIFA WLAYKQPNML LLDEPTNHLD IETIDSLAEA
LNEWDGGLVL VSHDFRLINQ VAHEIWVCEK QCITKWNGDI MDFKRHLKAK AGLED
