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RNP4F_DROME
ID   RNP4F_DROME             Reviewed;         941 AA.
AC   Q9W4D2; A4V3Z4; O18351; O18352; Q2VC69; Q2VC70; Q2VC71; Q2VC72; Q2VC73;
AC   Q2XP46;
DT   01-FEB-2005, integrated into UniProtKB/Swiss-Prot.
DT   01-MAY-2000, sequence version 1.
DT   03-AUG-2022, entry version 144.
DE   RecName: Full=RNA-binding protein 4F;
GN   Name=Rnp4F {ECO:0000312|EMBL:AAF46022.1};
GN   Synonyms=4f-rnp {ECO:0000312|EMBL:CAA75535.1}; ORFNames=CG3312;
OS   Drosophila melanogaster (Fruit fly).
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila; Sophophora.
OX   NCBI_TaxID=7227;
RN   [1] {ECO:0000305, ECO:0000312|EMBL:CAA75533.1}
RP   NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] (ISOFORMS A AND B), FUNCTION,
RP   SUBCELLULAR LOCATION, AND RNA EDITING.
RC   STRAIN=Oregon-R {ECO:0000269|PubMed:9434193};
RC   TISSUE=Embryo {ECO:0000269|PubMed:9434193},
RC   Head {ECO:0000312|EMBL:CAA75533.1}, and Pupae {ECO:0000269|PubMed:9434193};
RX   PubMed=9434193; DOI=10.1016/s0378-1119(97)00465-4;
RA   Petschek J.P., Scheckelhoff M.R., Mermer M.J., Vaughn J.C.;
RT   "RNA hyperediting and alternative splicing generate mRNA transcript
RT   diversity from the Drosophila 4f-rnp locus.";
RL   Gene 204:267-276(1997).
RN   [2] {ECO:0000305, ECO:0000312|EMBL:AAF46022.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Berkeley {ECO:0000269|PubMed:10731132};
RX   PubMed=10731132; DOI=10.1126/science.287.5461.2185;
RA   Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
RA   Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
RA   George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
RA   Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X., Brandon R.C.,
RA   Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C.,
RA   Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G., Abril J.F., Agbayani A.,
RA   An H.-J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A.,
RA   Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V.,
RA   Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J.,
RA   Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E.,
RA   Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B.,
RA   Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I.,
RA   Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C.,
RA   Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S.,
RA   Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M.,
RA   Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
RA   Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J., Hostin D.,
RA   Houston K.A., Howland T.J., Wei M.-H., Ibegwam C., Jalali M., Kalush F.,
RA   Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D.,
RA   Kraft C.L., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A.,
RA   Li J.H., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C.,
RA   McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C.,
RA   Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L.,
RA   Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R.,
RA   Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V.,
RA   Reese M.G., Reinert K., Remington K., Saunders R.D.C., Scheeler F.,
RA   Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J.,
RA   Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R.,
RA   Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.-Y.,
RA   Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., Woodage T.,
RA   Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.-F., Zaveri J.S.,
RA   Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W.,
RA   Zhou X., Zhu S.C., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M.,
RA   Venter J.C.;
RT   "The genome sequence of Drosophila melanogaster.";
RL   Science 287:2185-2195(2000).
RN   [3] {ECO:0000305, ECO:0000312|EMBL:AAF46022.1}
RP   GENOME REANNOTATION.
RC   STRAIN=Berkeley;
RX   PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
RA   Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
RA   Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
RA   Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P.,
RA   Bettencourt B.R., Celniker S.E., de Grey A.D.N.J., Drysdale R.A.,
RA   Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M.,
RA   Yamada C., Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E.;
RT   "Annotation of the Drosophila melanogaster euchromatic genome: a systematic
RT   review.";
RL   Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
RN   [4] {ECO:0000305, ECO:0000312|EMBL:AAL28943.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=Berkeley {ECO:0000269|PubMed:12537569};
RC   TISSUE=Embryo {ECO:0000269|PubMed:12537569};
RX   PubMed=12537569; DOI=10.1186/gb-2002-3-12-research0080;
RA   Stapleton M., Carlson J.W., Brokstein P., Yu C., Champe M., George R.A.,
RA   Guarin H., Kronmiller B., Pacleb J.M., Park S., Wan K.H., Rubin G.M.,
RA   Celniker S.E.;
RT   "A Drosophila full-length cDNA resource.";
RL   Genome Biol. 3:RESEARCH0080.1-RESEARCH0080.8(2002).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [MRNA] OF 1-243 AND 542-801 (ISOFORMS A AND B), AND
RP   ALTERNATIVE SPLICING.
RX   PubMed=16497447; DOI=10.1016/j.gene.2005.12.025;
RA   Fetherson R.A., Strock S.B., White K.N., Vaughn J.C.;
RT   "Alternative pre-mRNA splicing in Drosophila spliceosomal assembly factor
RT   RNP-4F during development.";
RL   Gene 371:234-245(2006).
RN   [6] {ECO:0000305}
RP   FUNCTION, RNA EDITING, DEVELOPMENTAL STAGE, AND INTERACTION WITH SAS10.
RC   STRAIN=Oregon-R {ECO:0000269|PubMed:12756328};
RX   PubMed=12756328; DOI=10.1261/rna.2120703;
RA   Peters N.T., Rohrbach J.A., Zalewski B.A., Byrkett C.M., Vaughn J.C.;
RT   "RNA editing and regulation of Drosophila 4f-rnp expression by sas-10
RT   antisense readthrough mRNA transcripts.";
RL   RNA 9:698-710(2003).
RN   [7]
RP   PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-43; SER-153; SER-713; TYR-717
RP   AND SER-718, AND IDENTIFICATION BY MASS SPECTROMETRY.
RC   TISSUE=Embryo;
RX   PubMed=18327897; DOI=10.1021/pr700696a;
RA   Zhai B., Villen J., Beausoleil S.A., Mintseris J., Gygi S.P.;
RT   "Phosphoproteome analysis of Drosophila melanogaster embryos.";
RL   J. Proteome Res. 7:1675-1682(2008).
CC   -!- FUNCTION: May be involved in gene regulation during development. Binds
CC       RNA. {ECO:0000269|PubMed:12756328, ECO:0000269|PubMed:9434193}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000305|PubMed:9434193}.
CC   -!- ALTERNATIVE PRODUCTS:
CC       Event=Alternative splicing; Named isoforms=2;
CC       Name=A {ECO:0000269|PubMed:9434193}; Synonyms=H6.1, E33.2;
CC         IsoId=Q9W4D2-1; Sequence=Displayed;
CC       Name=B {ECO:0000269|PubMed:9434193}; Synonyms=Pupal;
CC         IsoId=Q9W4D2-2; Sequence=VSP_051659, VSP_051660;
CC   -!- DEVELOPMENTAL STAGE: Expressed moderately during embryonic stages (0-18
CC       hours) but then declines in late stage embryos (15-21 hours).
CC       {ECO:0000269|PubMed:12756328}.
CC   -!- RNA EDITING: Modified_positions=9 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 13 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 17 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 21 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 31 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 41 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 46 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 50 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 54 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 57 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 59 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 70 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 80 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 84 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 86 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 91 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 96 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 101 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 107 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 113 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 116 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 130 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 132 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 135 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 138 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 139 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 141 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 163 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 164 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 183 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 190 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 193 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 196 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 200 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 205 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 207 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 213 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 218 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 220 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 225 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 265 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 275 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 298 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 299 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 302 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 311 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 314 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 319 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 321 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 322 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 328 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 354 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 355 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 368 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 381 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 383 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 389 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 393 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 396 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 398 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 400 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 406 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 409 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 430 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 431 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 433 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 437 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 444 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 453 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 456 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 482 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 490 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 492 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 493 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 497 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 510 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 513 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 516 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 520 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 521 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 525 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 540 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 551 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 552 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 553 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 554 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}, 555 {ECO:0000269|PubMed:12756328,
CC       ECO:0000269|PubMed:9434193}; Note=Partially edited. RNA editing takes
CC       place in adult and creates an intron retention event that leads to a
CC       premature stop codon. The RNA edited version is called H8.3. A
CC       discistronic transcript of Sas10 and Rnp4F becomes an RNA duplex, which
CC       is a target for RNA-editing via Adar editase.;
CC   -!- MISCELLANEOUS: [Isoform A]: Intron retention event in non-edited RNA.
CC   -!- MISCELLANEOUS: [Isoform B]: Intron excised in non-edited RNA.
CC       {ECO:0000305}.
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DR   EMBL; Y15249; CAA75533.1; -; mRNA.
DR   EMBL; Y15250; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; Y15251; CAA75535.1; -; mRNA.
DR   EMBL; AE014298; AAF46022.1; -; Genomic_DNA.
DR   EMBL; AE014298; AAS65263.1; -; Genomic_DNA.
DR   EMBL; AY061395; AAL28943.1; -; mRNA.
DR   EMBL; DQ269487; ABB89902.1; -; mRNA.
DR   EMBL; DQ269488; ABB89903.1; -; mRNA.
DR   EMBL; DQ269489; ABB89904.1; -; mRNA.
DR   EMBL; DQ269490; ABB89905.1; -; mRNA.
DR   EMBL; DQ269491; ABB89906.1; -; mRNA.
DR   EMBL; DQ272384; ABB82038.1; -; mRNA.
DR   RefSeq; NP_001096883.3; NM_001103413.3. [Q9W4D2-1]
DR   RefSeq; NP_001096884.1; NM_001103414.3. [Q9W4D2-1]
DR   RefSeq; NP_511047.2; NM_078492.4. [Q9W4D2-1]
DR   RefSeq; NP_996353.1; NM_206630.3. [Q9W4D2-1]
DR   AlphaFoldDB; Q9W4D2; -.
DR   SMR; Q9W4D2; -.
DR   BioGRID; 57958; 3.
DR   IntAct; Q9W4D2; 1.
DR   STRING; 7227.FBpp0089396; -.
DR   iPTMnet; Q9W4D2; -.
DR   PaxDb; Q9W4D2; -.
DR   PeptideAtlas; Q9W4D2; -.
DR   PRIDE; Q9W4D2; -.
DR   DNASU; 31448; -.
DR   EnsemblMetazoa; FBtr0070752; FBpp0070720; FBgn0014024. [Q9W4D2-1]
DR   EnsemblMetazoa; FBtr0070753; FBpp0089396; FBgn0014024. [Q9W4D2-1]
DR   EnsemblMetazoa; FBtr0112876; FBpp0111789; FBgn0014024. [Q9W4D2-1]
DR   EnsemblMetazoa; FBtr0340477; FBpp0309418; FBgn0014024. [Q9W4D2-1]
DR   GeneID; 31448; -.
DR   KEGG; dme:Dmel_CG3312; -.
DR   CTD; 31448; -.
DR   FlyBase; FBgn0014024; Rnp4F.
DR   VEuPathDB; VectorBase:FBgn0014024; -.
DR   eggNOG; KOG0128; Eukaryota.
DR   GeneTree; ENSGT00900000141107; -.
DR   HOGENOM; CLU_361804_0_0_1; -.
DR   InParanoid; Q9W4D2; -.
DR   OMA; RYERCYG; -.
DR   PhylomeDB; Q9W4D2; -.
DR   BioGRID-ORCS; 31448; 1 hit in 1 CRISPR screen.
DR   GenomeRNAi; 31448; -.
DR   PRO; PR:Q9W4D2; -.
DR   Proteomes; UP000000803; Chromosome X.
DR   Bgee; FBgn0014024; Expressed in embryonic/larval hemocyte (Drosophila) and 49 other tissues.
DR   ExpressionAtlas; Q9W4D2; baseline and differential.
DR   Genevisible; Q9W4D2; DM.
DR   GO; GO:0061574; C:ASAP complex; IBA:GO_Central.
DR   GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR   GO; GO:0005654; C:nucleoplasm; IBA:GO_Central.
DR   GO; GO:0003729; F:mRNA binding; ISS:FlyBase.
DR   GO; GO:0007417; P:central nervous system development; IMP:FlyBase.
DR   GO; GO:0000398; P:mRNA splicing, via spliceosome; IBA:GO_Central.
DR   Gene3D; 1.25.40.10; -; 1.
DR   Gene3D; 3.30.70.330; -; 1.
DR   InterPro; IPR003107; HAT.
DR   InterPro; IPR008669; LSM_interact.
DR   InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR   InterPro; IPR035979; RBD_domain_sf.
DR   InterPro; IPR000504; RRM_dom.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   Pfam; PF05391; Lsm_interact; 1.
DR   Pfam; PF00076; RRM_1; 1.
DR   SMART; SM00386; HAT; 3.
DR   SMART; SM00360; RRM; 1.
DR   SUPFAM; SSF48452; SSF48452; 1.
DR   SUPFAM; SSF54928; SSF54928; 1.
DR   PROSITE; PS50102; RRM; 1.
PE   1: Evidence at protein level;
KW   Alternative splicing; Cytoplasm; Developmental protein; Phosphoprotein;
KW   Reference proteome; RNA editing; RNA-binding.
FT   CHAIN           1..941
FT                   /note="RNA-binding protein 4F"
FT                   /id="PRO_0000081811"
FT   DOMAIN          724..801
FT                   /note="RRM"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00176"
FT   REGION          1..149
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          629..713
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          862..941
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1..16
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        17..32
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        51..66
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        67..88
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        127..149
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        631..658
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   MOD_RES         43
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000269|PubMed:18327897"
FT   MOD_RES         153
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000269|PubMed:18327897"
FT   MOD_RES         713
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000269|PubMed:18327897"
FT   MOD_RES         717
FT                   /note="Phosphotyrosine"
FT                   /evidence="ECO:0000269|PubMed:18327897"
FT   MOD_RES         718
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000269|PubMed:18327897"
FT   VAR_SEQ         625..639
FT                   /note="YVKPRSRIKPNSQSA -> SLSRASSSNKRIVSH (in isoform B)"
FT                   /evidence="ECO:0000303|PubMed:16497447,
FT                   ECO:0000303|PubMed:9434193"
FT                   /id="VSP_051659"
FT   VAR_SEQ         640..941
FT                   /note="Missing (in isoform B)"
FT                   /evidence="ECO:0000303|PubMed:16497447,
FT                   ECO:0000303|PubMed:9434193"
FT                   /id="VSP_051660"
FT   VARIANT         9
FT                   /note="R -> G (in RNA edited version)"
FT   VARIANT         13
FT                   /note="K -> R (in RNA edited version)"
FT   VARIANT         17
FT                   /note="E -> G (in RNA edited version)"
FT   VARIANT         21
FT                   /note="E -> G (in RNA edited version)"
FT   VARIANT         31
FT                   /note="Y -> C (in RNA edited version)"
FT   VARIANT         41
FT                   /note="K -> G (in RNA edited version)"
FT   VARIANT         46
FT                   /note="Q -> R (in RNA edited version)"
FT   VARIANT         50
FT                   /note="E -> G (in RNA edited version)"
FT   VARIANT         54
FT                   /note="Q -> R (in RNA edited version)"
FT   VARIANT         57
FT                   /note="E -> G (in RNA edited version)"
FT   VARIANT         59
FT                   /note="K -> R (in RNA edited version)"
FT   VARIANT         70
FT                   /note="T -> A (in RNA edited version)"
FT   VARIANT         80
FT                   /note="M -> V (in RNA edited version)"
FT   VARIANT         84
FT                   /note="E -> G (in RNA edited version)"
FT   VARIANT         86
FT                   /note="I -> V (in RNA edited version)"
FT   VARIANT         91
FT                   /note="E -> G (in RNA edited version)"
FT   VARIANT         96
FT                   /note="E -> G (in RNA edited version)"
FT   VARIANT         101
FT                   /note="N -> G (in RNA edited version)"
FT   VARIANT         107
FT                   /note="R -> G (in RNA edited version)"
FT   VARIANT         113
FT                   /note="S -> G (in RNA edited version)"
FT   VARIANT         116
FT                   /note="S -> G (in RNA edited version)"
FT   VARIANT         130
FT                   /note="N -> S (in RNA edited version)"
FT   VARIANT         132
FT                   /note="E -> G (in RNA edited version)"
FT   VARIANT         135
FT                   /note="S -> G (in RNA edited version)"
FT   VARIANT         138
FT                   /note="D -> G (in RNA edited version)"
FT   VARIANT         139
FT                   /note="S -> G (in RNA edited version)"
FT   VARIANT         141
FT                   /note="S -> G (in RNA edited version)"
FT   VARIANT         163
FT                   /note="K -> R (in RNA edited version)"
FT   VARIANT         164
FT                   /note="K -> G (in RNA edited version)"
FT   VARIANT         183
FT                   /note="K -> G (in RNA edited version)"
FT   VARIANT         190
FT                   /note="E -> G (in RNA edited version)"
FT   VARIANT         193
FT                   /note="N -> G (in RNA edited version)"
FT   VARIANT         196
FT                   /note="T -> A (in RNA edited version)"
FT   VARIANT         200
FT                   /note="H -> R (in RNA edited version)"
FT   VARIANT         205
FT                   /note="Y -> C (in RNA edited version)"
FT   VARIANT         207
FT                   /note="K -> G (in RNA edited version)"
FT   VARIANT         213
FT                   /note="T -> A (in RNA edited version)"
FT   VARIANT         218
FT                   /note="E -> G (in RNA edited version)"
FT   VARIANT         220
FT                   /note="K -> G (in RNA edited version)"
FT   VARIANT         225
FT                   /note="Q -> R (in RNA edited version)"
FT   VARIANT         265
FT                   /note="Y -> C (in RNA edited version)"
FT   VARIANT         275
FT                   /note="K -> R (in RNA edited version)"
FT   VARIANT         298
FT                   /note="K -> G (in RNA edited version)"
FT   VARIANT         299
FT                   /note="H -> R (in RNA edited version)"
FT   VARIANT         302
FT                   /note="T -> A (in RNA edited version)"
FT   VARIANT         311
FT                   /note="Q -> R (in RNA edited version)"
FT   VARIANT         314
FT                   /note="K -> G (in RNA edited version)"
FT   VARIANT         319
FT                   /note="K -> R (in RNA edited version)"
FT   VARIANT         321
FT                   /note="K -> E (in RNA edited version)"
FT   VARIANT         322
FT                   /note="Q -> R (in RNA edited version)"
FT   VARIANT         328
FT                   /note="T -> A (in RNA edited version)"
FT   VARIANT         354
FT                   /note="K -> R (in RNA edited version)"
FT   VARIANT         355
FT                   /note="N -> S (in RNA edited version)"
FT   VARIANT         368
FT                   /note="K -> G (in RNA edited version)"
FT   VARIANT         381
FT                   /note="E -> G (in RNA edited version)"
FT   VARIANT         383
FT                   /note="I -> V (in RNA edited version)"
FT   VARIANT         389
FT                   /note="T -> A (in RNA edited version)"
FT   VARIANT         393
FT                   /note="N -> S (in RNA edited version)"
FT   VARIANT         396
FT                   /note="E -> G (in RNA edited version)"
FT   VARIANT         398
FT                   /note="E -> G (in RNA edited version)"
FT   VARIANT         400
FT                   /note="T -> A (in RNA edited version)"
FT   VARIANT         406
FT                   /note="K -> R (in RNA edited version)"
FT   VARIANT         409
FT                   /note="K -> E (in RNA edited version)"
FT   VARIANT         430
FT                   /note="S -> G (in RNA edited version)"
FT   VARIANT         431
FT                   /note="H -> R (in RNA edited version)"
FT   VARIANT         433
FT                   /note="S -> G (in RNA edited version)"
FT   VARIANT         437
FT                   /note="N -> S (in RNA edited version)"
FT   VARIANT         444
FT                   /note="M -> V (in RNA edited version)"
FT   VARIANT         453
FT                   /note="E -> G (in RNA edited version)"
FT   VARIANT         456
FT                   /note="E -> G (in RNA edited version)"
FT   VARIANT         482
FT                   /note="Y -> C (in RNA edited version)"
FT   VARIANT         490
FT                   /note="S -> G (in RNA edited version)"
FT   VARIANT         492
FT                   /note="E -> G (in RNA edited version)"
FT   VARIANT         493
FT                   /note="Q -> R (in RNA edited version)"
FT   VARIANT         497
FT                   /note="S -> G (in RNA edited version)"
FT   VARIANT         510
FT                   /note="T -> A (in RNA edited version)"
FT   VARIANT         513
FT                   /note="Y -> C (in RNA edited version)"
FT   VARIANT         516
FT                   /note="Q -> R (in RNA edited version)"
FT   VARIANT         520
FT                   /note="R -> G (in RNA edited version)"
FT   VARIANT         521
FT                   /note="Y -> C (in RNA edited version)"
FT   VARIANT         525
FT                   /note="Q -> R (in RNA edited version)"
FT   VARIANT         540
FT                   /note="N -> G (in RNA edited version)"
FT   VARIANT         551
FT                   /note="Y -> E (in RNA edited version)"
FT   VARIANT         552
FT                   /note="P -> R (in RNA edited version)"
FT   VARIANT         553
FT                   /note="G -> F (in RNA edited version)"
FT   VARIANT         554
FT                   /note="S -> E (in RNA edited version)"
FT   VARIANT         555
FT                   /note="S -> I (in RNA edited version)"
FT   VARIANT         556..941
FT                   /note="Missing (in RNA edited version)"
FT   CONFLICT        104
FT                   /note="G -> D (in Ref. 1; CAA75533/CAA75535/Y15250)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        499
FT                   /note="R -> G (in Ref. 1; CAA75533/CAA75535/Y15250)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        672
FT                   /note="Q -> QQQ (in Ref. 1; CAA75533/CAA75535/Y15250)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   941 AA;  106740 MW;  EAF2775B499FECFD CRC64;
     MDADKQLERQ LEKELDEMPA EDLDDDAYDE YDLIVIPDQG KGSPQQGHSE SPQQEEEHKS
     EELRQRSRPT WPPSSAGGDM TTIELISSDD EPSVEETEGG NAAGRGRARN DSSSSSDDVG
     VIEGSELESN SEVSSDSDSD SDNAGGGNQL ERSYQELNAL PSKKFAQMVS LIGIAFKLND
     LEKIESSVLE LQNLATVPAH VWLKYLKARL VVTQTDEERK AFEEQCAKAL GYYYSIPLSE
     YVVNYLVDQG NVQNHVLWAK LLADYDVERP DFGDKLRSLI STITDENEAA AFVEMLQKHC
     VTWTCNVEQR QMIKSVVDKF KQHLDETTRG WDWSEQHKAH VYDVETLSLD DDLKNAVIRF
     IFERSVAKFP IVDVLWLSYI EFIQFEGVTV PENEDENEVT AEMVAKRAKR LGKGFLRNTE
     LDLANRGVRS HPSVQLNHRF LDLMERSDFE LAEVDEEIRL ILQRIVTDMD MTVELHLDYL
     AYRIRNTNAS DEQQVASLRA AFNHAWEELT VLYGDQADTR YEVLQLWAQV EYTQLGSPDN
     GREIWRQIMG YPGSSIRGLL WLNFAQMESE YNGGHGTRDV LRKALSQPVL ENGLMVQEFF
     RRYERCYGTY ESIAACQALD LPVEYVKPRS RIKPNSQSAY PRQQKLKPRQ QQQQTNREPL
     NREQRRRQAH EQQQQQQQQQ KHGIKKSRTE PSGGATSPPS KVKGPANAEA KESNFKYSPN
     MEINKIFVRN LHPACSKEEL HELFSPFGTI KDVRLVHKLN KQFKGIAYVE FEKPGEAQRA
     VAGRDGCLFK GMNISVAISN PPPRGTSAVK PSVAPKRRVP TSLIPTTLVR QEVAAKKLRL
     LLPEPGDISS TSASVDVAIK REANGEEQKG DVQERDEQKG EEQKGEEQKG EEPKGEEQKG
     DDQIGEEQSG VEQKGDEKKE EEMPAAVPKS NDDFRKLFLK D
 
 
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