AB20I_ARATH
ID AB20I_ARATH Reviewed; 328 AA.
AC Q9LZ98;
DT 03-OCT-2006, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 143.
DE RecName: Full=ABC transporter I family member 20;
DE Short=ABC transporter ABCI.20;
DE Short=AtABCI20;
DE AltName: Full=GCN-related protein 3;
DE AltName: Full=Non-intrinsic ABC protein 9;
GN Name=ABCI20; Synonyms=NAP9; OrderedLocusNames=At5g02270; ORFNames=T1E22.30;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=11346655; DOI=10.1074/jbc.m103104200;
RA Sanchez-Fernandez R., Davies T.G., Coleman J.O., Rea P.A.;
RT "The Arabidopsis thaliana ABC protein superfamily, a complete inventory.";
RL J. Biol. Chem. 276:30231-30244(2001).
RN [6]
RP INDUCTION, AND SUBCELLULAR LOCATION.
RC STRAIN=cv. Wassilewskija;
RX AGRICOLA=IND43814144; DOI=10.1016/j.plantsci.2006.02.014;
RA Marin E., Divol F., Bechtold N., Vavasseur A., Nussaume L., Forestier C.;
RT "Molecular characterization of three Arabidopsis soluble ABC proteins which
RT expression is induced by sugars.";
RL Plant Sci. 171:84-90(2006).
RN [7]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18299247; DOI=10.1016/j.tplants.2008.02.001;
RA Verrier P.J., Bird D., Burla B., Dassa E., Forestier C., Geisler M.,
RA Klein M., Kolukisaoglu H.U., Lee Y., Martinoia E., Murphy A., Rea P.A.,
RA Samuels L., Schulz B., Spalding E.J., Yazaki K., Theodoulou F.L.;
RT "Plant ABC proteins - a unified nomenclature and updated inventory.";
RL Trends Plant Sci. 13:151-159(2008).
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000269|Ref.6}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=1;
CC Comment=A number of isoforms are produced. According to EST
CC sequences.;
CC Name=1;
CC IsoId=Q9LZ98-1; Sequence=Displayed;
CC -!- INDUCTION: By sucrose. {ECO:0000269|Ref.6}.
CC -!- SIMILARITY: Belongs to the ABC transporter superfamily. ABCI family.
CC {ECO:0000305}.
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DR EMBL; AL162874; CAB85532.1; -; Genomic_DNA.
DR EMBL; CP002688; AED90452.1; -; Genomic_DNA.
DR EMBL; AF370554; AAK48981.1; -; mRNA.
DR EMBL; BT008725; AAP42738.1; -; mRNA.
DR EMBL; AY086132; AAM63337.1; -; mRNA.
DR PIR; T48248; T48248.
DR RefSeq; NP_195847.1; NM_120305.3. [Q9LZ98-1]
DR AlphaFoldDB; Q9LZ98; -.
DR SMR; Q9LZ98; -.
DR BioGRID; 16985; 1.
DR IntAct; Q9LZ98; 1.
DR STRING; 3702.AT5G02270.2; -.
DR PRIDE; Q9LZ98; -.
DR ProteomicsDB; 244530; -. [Q9LZ98-1]
DR EnsemblPlants; AT5G02270.1; AT5G02270.1; AT5G02270. [Q9LZ98-1]
DR GeneID; 831709; -.
DR Gramene; AT5G02270.1; AT5G02270.1; AT5G02270. [Q9LZ98-1]
DR KEGG; ath:AT5G02270; -.
DR Araport; AT5G02270; -.
DR eggNOG; KOG2355; Eukaryota.
DR InParanoid; Q9LZ98; -.
DR OMA; KHMVEPE; -.
DR PhylomeDB; Q9LZ98; -.
DR PRO; PR:Q9LZ98; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9LZ98; baseline and differential.
DR Genevisible; Q9LZ98; AT.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR Gene3D; 3.40.50.300; -; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR003439; ABC_transporter-like_ATP-bd.
DR InterPro; IPR027417; P-loop_NTPase.
DR Pfam; PF00005; ABC_tran; 1.
DR SMART; SM00382; AAA; 1.
DR SUPFAM; SSF52540; SSF52540; 1.
DR PROSITE; PS50893; ABC_TRANSPORTER_2; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; ATP-binding; Cytoplasm; Nucleotide-binding;
KW Reference proteome; Transport.
FT CHAIN 1..328
FT /note="ABC transporter I family member 20"
FT /id="PRO_0000250661"
FT DOMAIN 14..257
FT /note="ABC transporter"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00434"
FT REGION 263..295
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 263..292
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 55..62
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00434"
SQ SEQUENCE 328 AA; 36922 MW; EEEAC057A96CD7D3 CRC64;
MAVTEEEKKR NSTVEISGLR FTYPGIDGHP PPGSKPLIED FSITLNSSDR CLLVGSNGAG
KTTILKILGG KHMVEPHMVR VLGRSAFHDT GLTSSGDLCY LGGEWRRDVA FAGFEVPIQM
DISAEKMIFG VAGIDPQRRD ELIKVLDIDI SWRLHKVSDG QRRRVQICMG LLKPFKVLLL
DEITVDLDVL ARADLLKFLR KECEERGATI IYATHIFDGL EDWPTHIVYV ANGKLQLALP
MEKVKETSKK SLMRTVESWL RKERDEERKR RKERKANGLP EFETRTEESR VTGDPARMLN
NGWAAGRLHS TVAGGEDNFV LSSNRVLR
