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RNPS1_MACFA
ID   RNPS1_MACFA             Reviewed;         305 AA.
AC   Q4R5N1;
DT   22-NOV-2005, integrated into UniProtKB/Swiss-Prot.
DT   19-JUL-2005, sequence version 1.
DT   03-AUG-2022, entry version 86.
DE   RecName: Full=RNA-binding protein with serine-rich domain 1;
GN   Name=RNPS1; ORFNames=QccE-12931;
OS   Macaca fascicularis (Crab-eating macaque) (Cynomolgus monkey).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini;
OC   Cercopithecidae; Cercopithecinae; Macaca.
OX   NCBI_TaxID=9541;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   TISSUE=Brain cortex;
RG   International consortium for macaque cDNA sequencing and analysis;
RT   "DNA sequences of macaque genes expressed in brain or testis and its
RT   evolutionary implications.";
RL   Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Part of pre- and post-splicing multiprotein mRNP complexes.
CC       Auxiliary component of the splicing-dependent multiprotein exon
CC       junction complex (EJC) deposited at splice junction on mRNAs. The EJC
CC       is a dynamic structure consisting of core proteins and several
CC       peripheral nuclear and cytoplasmic associated factors that join the
CC       complex only transiently either during EJC assembly or during
CC       subsequent mRNA metabolism. Component of the ASAP and PSAP complexes
CC       which bind RNA in a sequence-independent manner and are proposed to be
CC       recruited to the EJC prior to or during the splicing process and to
CC       regulate specific excision of introns in specific transcription
CC       subsets. The ASAP complex can inhibit RNA processing during in vitro
CC       splicing reactions. The ASAP complex promotes apoptosis and is
CC       disassembled after induction of apoptosis. Enhances the formation of
CC       the ATP-dependent A complex of the spliceosome. Involved in both
CC       constitutive splicing and, in association with SRP54 and TRA2B/SFRS10,
CC       in distinctive modulation of alternative splicing in a substrate-
CC       dependent manner. Involved in the splicing modulation of BCL2L1/Bcl-X
CC       (and probably other apoptotic genes); specifically inhibits formation
CC       of proapoptotic isoforms such as Bcl-X(S); the activity is different
CC       from the established EJC assembly and function. Participates in mRNA
CC       3'-end cleavage. Involved in UPF2-dependent nonsense-mediated decay
CC       (NMD) of mRNAs containing premature stop codons. Also mediates increase
CC       of mRNA abundance and translational efficiency. Binds spliced mRNA 20-
CC       25 nt upstream of exon-exon junctions (By similarity). {ECO:0000250}.
CC   -!- SUBUNIT: Found in mRNA splicing-dependent exon junction complexes
CC       (EJC). Found in a post-splicing complex with NXF1, RBM8A, UPF1, UPF2,
CC       UPF3A, UPF3B and RNPS1. Component of the heterotrimeric ASAP
CC       (apoptosis- and splicing-associated protein) and PSAP complexes
CC       consisting of RNPS1, SAP18 and either ACIN1 or PNN, respectively; the
CC       ASAP and PSAP complexes probably are formed mutually exclusive.
CC       Component of the active spliceosome. Associates with polysomes.
CC       Interacts with the cleaved p110 isoform of CDC2L1, CSNK2A1, PNN, SART3,
CC       SRP54, SRRM1 and TRA2B/SFRS10 (By similarity). {ECO:0000250}.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}. Nucleus speckle
CC       {ECO:0000250}. Cytoplasm {ECO:0000250}. Note=Nucleocytoplasmic
CC       shuttling protein. Colocalizes with the core EJC, ALYREF/THOC4, NXF1
CC       and UAP56 in the nucleus and nuclear speckles (By similarity).
CC       {ECO:0000250}.
CC   -!- DOMAIN: The RRM domain is required for the formation of the ASAP
CC       complex. {ECO:0000250}.
CC   -!- PTM: Phosphorylated on one or more of the four Ser/Thr residues (Ser-
CC       43, Thr-49, Ser-52 or Ser-53). Ser-53 phosphorylation site is important
CC       for splicing and translation stimulation activity in vitro (By
CC       similarity). {ECO:0000250}.
CC   -!- SIMILARITY: Belongs to the splicing factor SR family. {ECO:0000305}.
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DR   EMBL; AB169512; BAE01594.1; -; mRNA.
DR   RefSeq; XP_005591024.1; XM_005590967.2.
DR   RefSeq; XP_005591028.1; XM_005590971.2.
DR   RefSeq; XP_015297914.1; XM_015442428.1.
DR   RefSeq; XP_015297915.1; XM_015442429.1.
DR   AlphaFoldDB; Q4R5N1; -.
DR   SMR; Q4R5N1; -.
DR   STRING; 9541.XP_005591024.1; -.
DR   Ensembl; ENSMFAT00000004049; ENSMFAP00000029846; ENSMFAG00000042142.
DR   GeneID; 102118439; -.
DR   KEGG; mcf:102118439; -.
DR   CTD; 10921; -.
DR   VEuPathDB; HostDB:ENSMFAG00000042142; -.
DR   eggNOG; KOG4209; Eukaryota.
DR   GeneTree; ENSGT00730000111029; -.
DR   OrthoDB; 1524222at2759; -.
DR   Proteomes; UP000233100; Chromosome 20.
DR   Bgee; ENSMFAG00000042142; Expressed in bone marrow and 13 other tissues.
DR   GO; GO:0061574; C:ASAP complex; ISS:UniProtKB.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR   GO; GO:0048025; P:negative regulation of mRNA splicing, via spliceosome; ISS:UniProtKB.
DR   GO; GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.
DR   GO; GO:0043065; P:positive regulation of apoptotic process; ISS:UniProtKB.
DR   GO; GO:0000381; P:regulation of alternative mRNA splicing, via spliceosome; ISS:UniProtKB.
DR   GO; GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
DR   CDD; cd12365; RRM_RNPS1; 1.
DR   Gene3D; 3.30.70.330; -; 1.
DR   InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR   InterPro; IPR035979; RBD_domain_sf.
DR   InterPro; IPR034201; RNPS1_RRM.
DR   InterPro; IPR000504; RRM_dom.
DR   Pfam; PF00076; RRM_1; 1.
DR   SMART; SM00360; RRM; 1.
DR   SUPFAM; SSF54928; SSF54928; 1.
DR   PROSITE; PS50102; RRM; 1.
PE   2: Evidence at transcript level;
KW   Acetylation; Cytoplasm; Isopeptide bond; mRNA processing; mRNA splicing;
KW   Nonsense-mediated mRNA decay; Nucleus; Phosphoprotein; Reference proteome;
KW   RNA-binding; Ubl conjugation.
FT   CHAIN           1..305
FT                   /note="RNA-binding protein with serine-rich domain 1"
FT                   /id="PRO_0000081818"
FT   DOMAIN          161..240
FT                   /note="RRM"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00176"
FT   REGION          1..220
FT                   /note="Necessary for interaction with the cleaved p110
FT                   isoform of CDC2L1"
FT                   /evidence="ECO:0000250"
FT   REGION          1..170
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1..161
FT                   /note="Necessary for interaction with SRP54, nuclear
FT                   localization and exon-skipping"
FT                   /evidence="ECO:0000250"
FT   REGION          69..121
FT                   /note="Necessary for interactions with UPF2 and UPF3B and
FT                   UPF2-dependent NMD"
FT                   /evidence="ECO:0000250"
FT   REGION          156..242
FT                   /note="Necessary for interaction with PNN and exon-
FT                   skipping"
FT                   /evidence="ECO:0000250"
FT   REGION          159..244
FT                   /note="Interaction with SAP18 and ACIN1"
FT                   /evidence="ECO:0000250"
FT   REGION          238..305
FT                   /note="Necessary for interaction with TRA2B, nuclear
FT                   localization and exon-skipping"
FT                   /evidence="ECO:0000250"
FT   REGION          240..305
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        26..67
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        68..126
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        240..265
FT                   /note="Pro residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        266..305
FT                   /note="Basic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   MOD_RES         53
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:Q15287"
FT   MOD_RES         155
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:Q15287"
FT   MOD_RES         157
FT                   /note="Phosphoserine"
FT                   /evidence="ECO:0000250|UniProtKB:Q15287"
FT   MOD_RES         161
FT                   /note="Phosphothreonine"
FT                   /evidence="ECO:0000250|UniProtKB:Q15287"
FT   MOD_RES         218
FT                   /note="N6-acetyllysine"
FT                   /evidence="ECO:0000250|UniProtKB:Q15287"
FT   CROSSLNK        7
FT                   /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with
FT                   G-Cter in SUMO2)"
FT                   /evidence="ECO:0000250|UniProtKB:Q15287"
FT   CROSSLNK        15
FT                   /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with
FT                   G-Cter in SUMO2)"
FT                   /evidence="ECO:0000250|UniProtKB:Q15287"
SQ   SEQUENCE   305 AA;  34208 MW;  930C9D36C2486144 CRC64;
     MDLSGVKKKS LLGVKENNKK SSTRAPSPTK RKDRSDEKSK DRSKDKGATK ESSEKDRGRD
     KTRKRRSASS GSSSTRSRSS STSSSGSSTS TGSSSGSSSS SASSRSGSSS TSRSSSSSSS
     SGSPSPSRRR HDNRRRSRSK SKPPKRDEKE RKRRSPSPKP TKVHIGRLTR NVTKDHIMEI
     FSTYGKIKMI DMPVERMHPH LSKGYAYVEF ENPDEAEKAL KHMDGGQIDG QEITATAVLA
     PWPRPPPRRF SPPRRMLPPP PMWRRSPPRM RRRSRSPRRR SPVRRRSRSP GRRRHRSRSS
     SNSSR
 
 
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