RNR_BUCAI
ID RNR_BUCAI Reviewed; 731 AA.
AC P57628;
DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot.
DT 15-NOV-2002, sequence version 2.
DT 03-AUG-2022, entry version 122.
DE RecName: Full=Ribonuclease R {ECO:0000255|HAMAP-Rule:MF_01895};
DE Short=RNase R {ECO:0000255|HAMAP-Rule:MF_01895};
DE EC=3.1.13.1 {ECO:0000255|HAMAP-Rule:MF_01895};
DE AltName: Full=VacB protein homolog;
GN Name=rnr {ECO:0000255|HAMAP-Rule:MF_01895}; OrderedLocusNames=BU565;
OS Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (Acyrthosiphon
OS pisum symbiotic bacterium).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Erwiniaceae; Buchnera.
OX NCBI_TaxID=107806;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=APS;
RX PubMed=10993077; DOI=10.1038/35024074;
RA Shigenobu S., Watanabe H., Hattori M., Sakaki Y., Ishikawa H.;
RT "Genome sequence of the endocellular bacterial symbiont of aphids Buchnera
RT sp. APS.";
RL Nature 407:81-86(2000).
CC -!- FUNCTION: 3'-5' exoribonuclease that releases 5'-nucleoside
CC monophosphates and is involved in maturation of structured RNAs.
CC {ECO:0000255|HAMAP-Rule:MF_01895}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=Exonucleolytic cleavage in the 3'- to 5'-direction to yield
CC nucleoside 5'-phosphates.; EC=3.1.13.1; Evidence={ECO:0000255|HAMAP-
CC Rule:MF_01895};
CC -!- SUBUNIT: Monomer. {ECO:0000255|HAMAP-Rule:MF_01895}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01895}.
CC -!- SIMILARITY: Belongs to the RNR ribonuclease family. RNase R subfamily.
CC {ECO:0000255|HAMAP-Rule:MF_01895}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAB13255.1; Type=Erroneous initiation; Note=Extended N-terminus.; Evidence={ECO:0000305};
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DR EMBL; BA000003; BAB13255.1; ALT_INIT; Genomic_DNA.
DR RefSeq; NP_240369.1; NC_002528.1.
DR RefSeq; WP_014498791.1; NC_002528.1.
DR AlphaFoldDB; P57628; -.
DR SMR; P57628; -.
DR STRING; 107806.10039221; -.
DR EnsemblBacteria; BAB13255; BAB13255; BAB13255.
DR KEGG; buc:BU565; -.
DR PATRIC; fig|107806.10.peg.568; -.
DR eggNOG; COG0557; Bacteria.
DR HOGENOM; CLU_002333_7_0_6; -.
DR OMA; DWYEYRS; -.
DR Proteomes; UP000001806; Chromosome.
DR GO; GO:0005829; C:cytosol; IEA:UniProt.
DR GO; GO:0008859; F:exoribonuclease II activity; IEA:UniProtKB-UniRule.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR Gene3D; 2.40.50.140; -; 2.
DR HAMAP; MF_01895; RNase_R; 1.
DR InterPro; IPR011129; CSD.
DR InterPro; IPR040476; CSD2.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR013223; RNase_B_OB_dom.
DR InterPro; IPR001900; RNase_II/R.
DR InterPro; IPR022966; RNase_II/R_CS.
DR InterPro; IPR004476; RNase_II/RNase_R.
DR InterPro; IPR011805; RNase_R.
DR InterPro; IPR022967; S1_dom.
DR InterPro; IPR003029; S1_domain.
DR Pfam; PF17876; CSD2; 1.
DR Pfam; PF08206; OB_RNB; 1.
DR Pfam; PF00773; RNB; 1.
DR Pfam; PF00575; S1; 1.
DR SMART; SM00357; CSP; 1.
DR SMART; SM00955; RNB; 1.
DR SMART; SM00316; S1; 1.
DR SUPFAM; SSF50249; SSF50249; 4.
DR TIGRFAMs; TIGR00358; 3_prime_RNase; 1.
DR TIGRFAMs; TIGR02063; RNase_R; 1.
DR PROSITE; PS01175; RIBONUCLEASE_II; 1.
DR PROSITE; PS50126; S1; 1.
PE 3: Inferred from homology;
KW Cytoplasm; Exonuclease; Hydrolase; Nuclease; Reference proteome;
KW RNA-binding.
FT CHAIN 1..731
FT /note="Ribonuclease R"
FT /id="PRO_0000166397"
FT DOMAIN 647..728
FT /note="S1 motif"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_01895"
SQ SEQUENCE 731 AA; 84807 MW; 1AED36ACF09CCC2A CRC64;
MVVDPYQKRE AKRYKNPIPS REYISSCLRT SQDLISQKNL EKKFGINNQE SKKALRRRLR
AMERDGQVIY TSNRCYVAPE SLKIVKGKVI GHRDGYGFLR TETLKEDLWL SSEQMKSCIH
GDIILAHIVE THGKRRSSAR FLKLLQPNNI LIVGRYYIDD KIKFVIPDDT RFNFKIFIFS
AIKDDISIGS IVSVKLKQHP IRNSRVQGFI VEILGKEMGT NLAIEIALRT HLIPSLWSKE
VKKQVYEISR KINQYDFKNR TDLRHFPFFT IDDEDARDFD DAVFCKRKAN PEEGWILWVA
IADVSCYVQP NTPLDKAALE RGTSVYFPSL VIPMLPEKIS TDLCSLKPNV ERLCLICEMS
LSKQGELISY KHYEGIICSH GRFTYNEIFK IWNGDIFLRS KYKKFLKDIE NLSCLQNIFN
KDNISKKGIY FENIEPKFVL DSNLRIKSIY QNIRNDAHKF IESCMILANV ASARFVEKYK
YPVLFRNHDR PKKDNVVSLR LFLNELGFTL LGGDSPESVH YSNLLKNVSD RPEYEMIQTV
LLRSMTQAVY SPDNRGHFGL SLSSYVHFTS PIRRYPDLIL HRVIKYLLFK DKNTSKSNYN
FYSAHLYSTG EIKKIGAHCS ITERRADEAN RDVIDWLKCD FMYKKIGCIL NGVISNVTTF
GFFVRLNQFF IDGLVHINSL NDDYYYFDSL GLKLIGKSTK NTYCLGDALK VKVISVNLNE
KKIELSLYKS S