AB25G_ORYSJ
ID AB25G_ORYSJ Reviewed; 1004 AA.
AC B9G5Y5; A0A0P0XVM6; Q0IXF0; Q337T0;
DT 12-APR-2017, integrated into UniProtKB/Swiss-Prot.
DT 24-MAR-2009, sequence version 1.
DT 03-AUG-2022, entry version 73.
DE RecName: Full=ABC transporter G family member 25 {ECO:0000303|PubMed:18299247};
DE Short=OsABCG25 {ECO:0000303|PubMed:18299247};
DE AltName: Full=Putative white-brown complex homolog protein 26 {ECO:0000303|PubMed:22996334};
DE Short=OsWBC26 {ECO:0000303|PubMed:22996334};
DE Flags: Precursor;
GN Name=ABCG25 {ECO:0000303|PubMed:18299247};
GN Synonyms=WBC26 {ECO:0000303|PubMed:22996334};
GN OrderedLocusNames=LOC_Os10g30610 {ECO:0000312|EMBL:ABB47708.1},
GN Os10g0442900 {ECO:0000312|EMBL:BAF26615.1},
GN Os10g0442950 {ECO:0000312|EMBL:BAT11049.1};
GN ORFNames=OsJ_31680 {ECO:0000312|EMBL:EEE51032.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000312|EMBL:EEE51032.1};
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12791992; DOI=10.1126/science.1083523;
RA Yu Y., Rambo T., Currie J., Saski C., Kim H.-R., Collura K., Thompson S.,
RA Simmons J., Yang T.-J., Nah G., Patel A.J., Thurmond S., Henry D.,
RA Oates R., Palmer M., Pries G., Gibson J., Anderson H., Paradkar M.,
RA Crane L., Dale J., Carver M.B., Wood T., Frisch D., Engler F.,
RA Soderlund C., Palmer L.E., Teytelman L., Nascimento L., De la Bastide M.,
RA Spiegel L., Ware D., O'Shaughnessy A., Dike S., Dedhia N., Preston R.,
RA Huang E., Ferraro K., Kuit K., Miller B., Zutavern T., Katzenberger F.,
RA Muller S., Balija V., Martienssen R.A., Stein L., Minx P., Johnson D.,
RA Cordum H., Mardis E., Cheng Z., Jiang J., Wilson R., McCombie W.R.,
RA Wing R.A., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K.,
RA Moffat K., Hill J., Tsitrin T., Overton L., Bera J., Kim M., Jin S.,
RA Tallon L., Ciecko A., Pai G., Van Aken S., Utterback T., Reidmuller S.,
RA Bormann J., Feldblyum T., Hsiao J., Zismann V., Blunt S., de Vazeille A.R.,
RA Shaffer T., Koo H., Suh B., Yang Q., Haas B., Peterson J., Pertea M.,
RA Volfovsky N., Wortman J., White O., Salzberg S.L., Fraser C.M., Buell C.R.,
RA Messing J., Song R., Fuks G., Llaca V., Kovchak S., Young S., Bowers J.E.,
RA Paterson A.H., Johns M.A., Mao L., Pan H., Dean R.A.;
RT "In-depth view of structure, activity, and evolution of rice chromosome
RT 10.";
RL Science 300:1566-1569(2003).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18299247; DOI=10.1016/j.tplants.2008.02.001;
RA Verrier P.J., Bird D., Burla B., Dassa E., Forestier C., Geisler M.,
RA Klein M., Kolukisaoglu H.U., Lee Y., Martinoia E., Murphy A., Rea P.A.,
RA Samuels L., Schulz B., Spalding E.J., Yazaki K., Theodoulou F.L.;
RT "Plant ABC proteins - a unified nomenclature and updated inventory.";
RL Trends Plant Sci. 13:151-159(2008).
RN [7]
RP GENE FAMILY, NOMENCLATURE, AND INDUCTION BY ABIOTIC STRESS AND HORMONES.
RX PubMed=22996334; DOI=10.1007/s00438-012-0719-3;
RA Matsuda S., Funabiki A., Furukawa K., Komori N., Koike M., Tokuji Y.,
RA Takamure I., Kato K.;
RT "Genome-wide analysis and expression profiling of half-size ABC protein
RT subgroup G in rice in response to abiotic stress and phytohormone
RT treatments.";
RL Mol. Genet. Genomics 287:819-835(2012).
RN [8]
RP GENE FAMILY.
RX PubMed=25531538; DOI=10.1016/j.compbiolchem.2014.11.005;
RA Saha J., Sengupta A., Gupta K., Gupta B.;
RT "Molecular phylogenetic study and expression analysis of ATP-binding
RT cassette transporter gene family in Oryza sativa in response to salt
RT stress.";
RL Comput. Biol. Chem. 54:18-32(2015).
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000255}; Multi-pass membrane
CC protein {ECO:0000255}.
CC -!- INDUCTION: Up-regulated in shoots by cold, heat, salicylic acid and 1-
CC aminocyclopropane-1-carboxylic acid (ACC). Down-regulated in shoots by
CC mannitol, abscisic acid, kinetin, benzylaminopurine, indole-3-acetic
CC acid and gibberellic acid. Up-regulated in roots by clod, salt,
CC jasmonic acid, salicylic acid, ACC and benzylaminopurine. Down-
CC regulated in roots by indole-3-acetic acid and gibberellic acid.
CC {ECO:0000269|PubMed:22996334}.
CC -!- SIMILARITY: Belongs to the ABC transporter superfamily. ABCG family.
CC Eye pigment precursor importer (TC 3.A.1.204) subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=ABB47708.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=ABB47709.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAF26615.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAT11049.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; DP000086; ABB47708.1; ALT_SEQ; Genomic_DNA.
DR EMBL; DP000086; ABB47709.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008216; BAF26615.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014966; BAT11049.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CM000147; EEE51032.1; -; Genomic_DNA.
DR AlphaFoldDB; B9G5Y5; -.
DR SMR; B9G5Y5; -.
DR STRING; 4530.OS10T0442950-00; -.
DR PRIDE; B9G5Y5; -.
DR eggNOG; KOG0061; Eukaryota.
DR HOGENOM; CLU_000604_57_0_1; -.
DR Proteomes; UP000000763; Chromosome 10.
DR Proteomes; UP000007752; Chromosome 10.
DR Proteomes; UP000059680; Chromosome 10.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0016020; C:membrane; IBA:GO_Central.
DR GO; GO:0140359; F:ABC-type transporter activity; IEA:InterPro.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0042626; F:ATPase-coupled transmembrane transporter activity; IBA:GO_Central.
DR GO; GO:0055085; P:transmembrane transport; IBA:GO_Central.
DR Gene3D; 3.40.50.300; -; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR003439; ABC_transporter-like_ATP-bd.
DR InterPro; IPR017871; ABC_transporter-like_CS.
DR InterPro; IPR043926; ABCG_dom.
DR InterPro; IPR027417; P-loop_NTPase.
DR Pfam; PF19055; ABC2_membrane_7; 1.
DR Pfam; PF00005; ABC_tran; 1.
DR SMART; SM00382; AAA; 1.
DR SUPFAM; SSF52540; SSF52540; 1.
DR PROSITE; PS00211; ABC_TRANSPORTER_1; 1.
DR PROSITE; PS50893; ABC_TRANSPORTER_2; 1.
PE 2: Evidence at transcript level;
KW ATP-binding; Membrane; Nucleotide-binding; Reference proteome; Signal;
KW Transmembrane; Transmembrane helix; Transport.
FT SIGNAL 1..27
FT /evidence="ECO:0000255"
FT CHAIN 28..1004
FT /note="ABC transporter G family member 25"
FT /evidence="ECO:0000255"
FT /id="PRO_5002884587"
FT TRANSMEM 271..291
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 776..796
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 804..824
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 886..906
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 907..927
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 943..963
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 978..998
FT /note="Helical"
FT /evidence="ECO:0000255"
FT DOMAIN 419..659
FT /note="ABC transporter"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00434"
FT REGION 343..373
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 451..458
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00434"
SQ SEQUENCE 1004 AA; 110748 MW; 6B4FC01C8BAB5BE7 CRC64;
MAASQLLAAA VAAAVFLAAL LVPPARCQQQ QVANPGPRVR QAARIDAVRD ELAAEVQAKY
GFCMANVQED FTQAFSFSNA SFVSDCMEET QGQMTGMLCG KAEIEIYVKS LGKKPSTRVS
RNCDQNSWAL GCQPGWACAR QDSSSSGREV PSRAVNCRPC YPGFFCPRGL TCMIPCPLGA
YCPLATLNDT TGLCDPYSYQ ITPGSNTACG TADSWADVIT TDDVFCPPGH HCPTTTQKFN
CTEGYYCRKG STEEHKCIWK NTCKENSTKE ATALFGGILI VILSVVLLLV YNCSDQFIKI
RAKILSKSRR KAATIAQESA TARGRWKLAK ELVLSHELEM SESDQLAASS NEARHATEGN
GKRSKNRKKL AHARTERFRR AYSQIGRERV LQPDNDKITL SGVVALAAEN RSRRPMFEVV
FKGLTLSIGK KKLLQCVTGK LSPGRVTAIM GPSGAGKTTF LNAVLGKTTG YKKDGLVLIN
GKSGSMQSYK KIIGFVPQDD IVHGNLTVEE NLWFSACCRS SKGMSKSDKI IVLERVIGSL
GLQEIRNSLV GTVEKRGISG GQRKRVNVGI EMVMEPSLLI LDEPTTGLDS ASSQLLLRAL
RHEALQGVNV CAVIHQPSYT LFNMFDDFVL LARGGLIAYL GPISEVETYF SSLGIKVPER
ENPPDYYIDI LEGITKTKMR GHAAPKHLPL LWMLRNGYEV PEYMQKDLED INNVHELYTV
GSMSREESFG DQSENADSVH QNVREPYSLL DRKTPGVLAQ YKYYLGRVTK QRLREATLQA
VDYLILCIAG ICIGTIAKVK DDTFGVASYG YTIIAVSLLC QLAALRSFSP ERLQYWRERE
SGMSTLAYFL ARDTIDHFNT LVKPVAFLST FYFFNNPRSE FKDNYLVFLA LVYCVTGIGY
TFAIWFELGL AQLCSALIPV VLVLVGTQPN IPNFIKGLCY PKWALEALII AGAKKYSGVW
LITRCGALLK GGYDINNFVL CIVIVMLMGV LFRFIALLSL LKLK
