RNY_UREP2
ID RNY_UREP2 Reviewed; 473 AA.
AC B1AI70;
DT 22-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 08-APR-2008, sequence version 1.
DT 03-AUG-2022, entry version 80.
DE RecName: Full=Ribonuclease Y {ECO:0000255|HAMAP-Rule:MF_00335};
DE Short=RNase Y {ECO:0000255|HAMAP-Rule:MF_00335};
DE EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_00335};
GN Name=rny {ECO:0000255|HAMAP-Rule:MF_00335}; OrderedLocusNames=UPA3_0084;
OS Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736).
OC Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Ureaplasma.
OX NCBI_TaxID=505682;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 27815 / 27 / NCTC 11736;
RA Methe B.A., Glass J., Waites K., Shrivastava S.;
RT "Genome sequence of Ureaplasma parvum serovar 3.";
RL Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Endoribonuclease that initiates mRNA decay.
CC {ECO:0000255|HAMAP-Rule:MF_00335}.
CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000255|HAMAP-Rule:MF_00335};
CC Single-pass membrane protein {ECO:0000255|HAMAP-Rule:MF_00335}.
CC -!- SIMILARITY: Belongs to the RNase Y family. {ECO:0000255|HAMAP-
CC Rule:MF_00335}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; CP000942; ACA32756.1; -; Genomic_DNA.
DR RefSeq; WP_006688749.1; NC_010503.1.
DR AlphaFoldDB; B1AI70; -.
DR SMR; B1AI70; -.
DR PRIDE; B1AI70; -.
DR EnsemblBacteria; ACA32756; ACA32756; UPA3_0084.
DR GeneID; 29672747; -.
DR KEGG; upa:UPA3_0084; -.
DR HOGENOM; CLU_028328_1_0_14; -.
DR OMA; PHAILGM; -.
DR OrthoDB; 1012190at2; -.
DR Proteomes; UP000002162; Chromosome.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0004521; F:endoribonuclease activity; IEA:UniProtKB-UniRule.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0006402; P:mRNA catabolic process; IEA:UniProtKB-UniRule.
DR CDD; cd00077; HDc; 1.
DR HAMAP; MF_00335; RNase_Y; 1.
DR InterPro; IPR003607; HD/PDEase_dom.
DR InterPro; IPR006674; HD_domain.
DR InterPro; IPR006675; HDIG_dom.
DR InterPro; IPR036612; KH_dom_type_1_sf.
DR InterPro; IPR017705; Ribonuclease_Y.
DR PANTHER; PTHR12826:SF15; PTHR12826:SF15; 1.
DR Pfam; PF01966; HD; 1.
DR SMART; SM00471; HDc; 1.
DR SUPFAM; SSF54791; SSF54791; 1.
DR TIGRFAMs; TIGR00277; HDIG; 1.
DR PROSITE; PS51831; HD; 1.
PE 3: Inferred from homology;
KW Cell membrane; Endonuclease; Hydrolase; Membrane; Nuclease; RNA-binding;
KW Transmembrane; Transmembrane helix.
FT CHAIN 1..473
FT /note="Ribonuclease Y"
FT /id="PRO_0000344972"
FT TRANSMEM 4..24
FT /note="Helical"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00335"
FT DOMAIN 158..218
FT /note="KH"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00335"
FT DOMAIN 285..378
FT /note="HD"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01175"
SQ SEQUENCE 473 AA; 54323 MW; D02D83602817F112 CRC64;
MGYLIAFIIL LILFVLLITI VPVVMVVYLK KKQLKLTFVP KSQTSFKKIV QKTKDLEEEC
EDLNNKNNEL KKAISDQNLQ IDLLKKNNEN FLLNATSLTA EQAKKELFNL LKIKFKKELA
QEYAKIKHEF NEAQEIYAQN ILVETMEQIA EPLIVERSLF NIDIIDENLK GKIIGRDGRN
KAVFENEGGV DLIVDRQQPI VGISTPNPIR REIARIVMQK LIDSKNIDIN RIELLFKEER
EKFEKKVFEI GKNVVEQTLG FFDLPEGIYS YIGRMKFRNS YGQNILSHSL EVAEYAERIA
KLINIDPIKA KKAAFFHDIG KTIDFESDLD HVEAGLLIAK KFNLDDYIYN AIESHHNKVI
PTTIYGALVK IVDTLSAARP GARVNSYDEY YSRVKELETI CMRFEGVKSA YVIKSGRQLR
VIVDSNLVSD EQLELLGHEI KVAIEENDLL TNYKIKIVLI KEKRISIDTN IIG