ROC6_ORYSJ
ID ROC6_ORYSJ Reviewed; 872 AA.
AC Q7Y0V7; Q0J076;
DT 29-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT 29-APR-2008, sequence version 2.
DT 03-AUG-2022, entry version 109.
DE RecName: Full=Homeobox-leucine zipper protein ROC6;
DE AltName: Full=GLABRA 2-like homeobox protein 6;
DE AltName: Full=HD-ZIP protein ROC6;
DE AltName: Full=Homeodomain transcription factor ROC6;
DE AltName: Full=Protein RICE OUTERMOST CELL-SPECIFIC 6;
GN Name=ROC6; Synonyms=GL2-6; OrderedLocusNames=Os09g0526300, LOC_Os09g35760;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 122-252.
RA Ito M., Sentoku N., Nishimura A., Hong S.-K., Sato Y., Matsuoka M.;
RT "The roles of rice GL2-type homeobox genes in epidermis differentiation.";
RL Submitted (JAN-2003) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Probable transcription factor. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the HD-ZIP homeobox family. Class IV subfamily.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF25639.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP008215; BAF25639.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014965; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AB101649; BAC77159.1; -; mRNA.
DR AlphaFoldDB; Q7Y0V7; -.
DR SMR; Q7Y0V7; -.
DR STRING; 4530.OS09T0526300-00; -.
DR PaxDb; Q7Y0V7; -.
DR PRIDE; Q7Y0V7; -.
DR eggNOG; ENOG502QUAY; Eukaryota.
DR InParanoid; Q7Y0V7; -.
DR Proteomes; UP000000763; Chromosome 9.
DR Proteomes; UP000059680; Chromosome 9.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IEA:InterPro.
DR GO; GO:0008289; F:lipid binding; IEA:InterPro.
DR CDD; cd00086; homeodomain; 1.
DR Gene3D; 3.30.530.20; -; 1.
DR InterPro; IPR042160; GLABRA2/ANL2/PDF2/ATML1-like.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017970; Homeobox_CS.
DR InterPro; IPR001356; Homeobox_dom.
DR InterPro; IPR023393; START-like_dom_sf.
DR InterPro; IPR002913; START_lipid-bd_dom.
DR PANTHER; PTHR45654; PTHR45654; 1.
DR Pfam; PF00046; Homeodomain; 1.
DR Pfam; PF01852; START; 1.
DR SMART; SM00389; HOX; 1.
DR SMART; SM00234; START; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR PROSITE; PS00027; HOMEOBOX_1; 1.
DR PROSITE; PS50071; HOMEOBOX_2; 1.
DR PROSITE; PS50848; START; 1.
PE 2: Evidence at transcript level;
KW Coiled coil; DNA-binding; Homeobox; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..872
FT /note="Homeobox-leucine zipper protein ROC6"
FT /id="PRO_0000331743"
FT DOMAIN 340..583
FT /note="START"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00197"
FT DNA_BIND 122..181
FT /note="Homeobox"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00108"
FT REGION 28..53
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 67..130
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 792..818
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 176..248
FT /evidence="ECO:0000255"
FT COMPBIAS 86..100
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 798..818
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 872 AA; 91720 MW; 205E50823DF0572C CRC64;
MSFGGMFDGA GSGVFSYDAG GGGGGGGVHN SRLLPTPPVP KPGGGFAAPG LSLGLQTMDG
SQLGDVNRSL AMMGNGGSGS GGDGDSLGRG REEENDSRSG SDNLDGASGD ELDPDNSNPR
KKKKRYHRHT PQQIQELEAV FKECPHPDEK QRMELSRRLN LESRQVKFWF QNRRTQMKQT
QIERHENALL RQENDKLRAE NMTIREAMRN PMCASCGGAA VLGEVSLEEQ HLRIENARLK
DELDRVCALA GKFLGRPISS ISSPGPPSLQ ACSGLELGVG SNGGFGLGAL GASAAMQSIP
DLMGGSSGLT GGPVGSAAMR LPAGIGGLDG AMHAAAADGG AIDRAVLLEL ALAAMDELVK
VAQMDEPLWL PSLDGGFETL NYDEYHRAFA RVVGQCPAGY VSEATRESGI AIISSVDLVD
SLMDAPRWSE MFPCVVARAS TTDIISSGMG GTRSGSIQLM HAELQVLSPL VPIREVVFLR
FCKQHAEGLW AVVDVSVDAV LRPDQNGGGG SSSSSYMGCR LLPTGCIVQD MNNGYSKVTW
VVHAEYDETA AHQLYRPLLR SGQALGARRW LASLQRQCQY LAILCSNSLP ARDHAAITPV
GRRSMLKLAQ RMTDNFCAGV CASAAQKWRR LDEWRGEGGG GGGGGGGDGE DKVRMMARHS
VGAPGEPPGV VLSATTSVRL PGTLPQRVFD YLRDEQRRGD WDILANGEAM QEMDHIAKGQ
HHGNAVSLLR PNATSGNQNN MLILQETCTD SSGSLVVYAP VDVQSMHVVM NGGDSAYVSL
LPSGFAILPD GHNNGASPSP AEVGSGASPN SAAGGGGGSN NTGSLVTVAF QILVNNLPTA
KLTVESVDTV SNLLSCTIQK IKSALQASII SP
