ROC8_ORYSJ
ID ROC8_ORYSJ Reviewed; 710 AA.
AC Q69T58; Q0DDQ7; Q7Y0V5;
DT 29-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT 29-APR-2008, sequence version 2.
DT 25-MAY-2022, entry version 113.
DE RecName: Full=Homeobox-leucine zipper protein ROC8;
DE AltName: Full=GLABRA 2-like homeobox protein 8;
DE AltName: Full=HD-ZIP protein ROC8;
DE AltName: Full=Homeodomain transcription factor ROC8;
DE AltName: Full=Protein RICE OUTERMOST CELL-SPECIFIC 8;
GN Name=ROC8; Synonyms=GL2-8; OrderedLocusNames=Os06g0208100, LOC_Os06g10600;
GN ORFNames=P0664C05.15;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 15-143.
RA Ito M., Sentoku N., Nishimura A., Hong S.-K., Sato Y., Matsuoka M.;
RT "The roles of rice GL2-type homeobox genes in epidermis differentiation.";
RL Submitted (JAN-2003) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Probable transcription factor. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the HD-ZIP homeobox family. Class IV subfamily.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAD35894.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAF19016.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP004758; BAD35894.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008212; BAF19016.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014962; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AB101651; BAC77161.1; -; mRNA.
DR RefSeq; XP_015642098.1; XM_015786612.1.
DR AlphaFoldDB; Q69T58; -.
DR SMR; Q69T58; -.
DR STRING; 4530.OS06T0207966-00; -.
DR PRIDE; Q69T58; -.
DR GeneID; 4340445; -.
DR KEGG; osa:4340445; -.
DR eggNOG; ENOG502QQXM; Eukaryota.
DR HOGENOM; CLU_015002_3_0_1; -.
DR InParanoid; Q69T58; -.
DR OrthoDB; 250988at2759; -.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 6.
DR Genevisible; Q69T58; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IEA:InterPro.
DR GO; GO:0008289; F:lipid binding; IEA:InterPro.
DR CDD; cd00086; homeodomain; 1.
DR Gene3D; 3.30.530.20; -; 1.
DR InterPro; IPR042160; GLABRA2/ANL2/PDF2/ATML1-like.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017970; Homeobox_CS.
DR InterPro; IPR001356; Homeobox_dom.
DR InterPro; IPR023393; START-like_dom_sf.
DR InterPro; IPR002913; START_lipid-bd_dom.
DR PANTHER; PTHR45654; PTHR45654; 1.
DR Pfam; PF00046; Homeodomain; 1.
DR Pfam; PF01852; START; 1.
DR SMART; SM00389; HOX; 1.
DR SMART; SM00234; START; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR PROSITE; PS00027; HOMEOBOX_1; 1.
DR PROSITE; PS50071; HOMEOBOX_2; 1.
DR PROSITE; PS50848; START; 1.
PE 2: Evidence at transcript level;
KW Coiled coil; DNA-binding; Homeobox; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..710
FT /note="Homeobox-leucine zipper protein ROC8"
FT /id="PRO_0000331746"
FT DOMAIN 197..440
FT /note="START"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00197"
FT DNA_BIND 15..74
FT /note="Homeobox"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00108"
FT REGION 1..23
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 630..650
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 82..144
FT /evidence="ECO:0000255"
SQ SEQUENCE 710 AA; 76862 MW; A660CE35B25840EA CRC64;
MDFGDEPEGS DSQRRRKRYH RHTPRQIQQL EAMFKECPHP DENQRAQLSR ELGLEPRQIK
FWFQNRRTQM KAQHERADNC FLRAENDKIR CENIAIREAL KNVICPTCGG PPVGEDYFDE
QKLRMENARL KEELDRVSNL TSKYLGRPFT QLPPATPPMT VSSLDLSVGG MGGPSLDLDL
LSGGSSGIPF QLPAPVSDME RPMMAEMATR AMDELIRLAQ AGDHIWSKSP GGGVSGGDAR
ETLNVDTYDS IFSKPGGSYR APSINVEGSR ESGLVLMSAV ALADVFMDTN KWMEFFPSIV
SKAHTIDVLV NGMGGRSESL ILMYEELHIM TPAVPTREVN FVRYCRQIEQ GLWAIADVSV
DLQRDAHFGA PPPRSRRLPS GCLIADMANG YSKVTWVEHM EVEEKSPINV LYRDLVLSGA
AFGAHRWLAA LQRACERYAS LVALGVPHHI AGVTPEGKRS MMKLSQRMVN SFCSSLGASQ
MHQWTTLSGS NEVSVRVTMH RSTDPGQPNG VVLSAATSIW LPVPCDHVFA FVRDENTRSQ
WDVLSHGNQV QEVSRIPNGS NPGNCISLLR GLNASQNSML ILQESCTDAS GSLVVYSPID
IPAANVVMSG EDPSSIPLLP SGFTILPDGR PGSAAGASTS SAGPLAAARG GGGGGAGGGS
VVTVAFQILV SSLPSSKLNA ESVATVNGLI TTTVEQIKAA LNCSAHGHHP
