ROC9_ORYSJ
ID ROC9_ORYSJ Reviewed; 816 AA.
AC Q5JMF3; Q0JJ46; Q7Y0V4; Q94DS6;
DT 29-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT 15-FEB-2005, sequence version 1.
DT 03-AUG-2022, entry version 110.
DE RecName: Full=Homeobox-leucine zipper protein ROC9;
DE AltName: Full=GLABRA 2-like homeobox protein 9;
DE AltName: Full=HD-ZIP protein ROC9;
DE AltName: Full=Homeodomain transcription factor ROC9;
DE AltName: Full=Protein RICE OUTERMOST CELL-SPECIFIC 9;
GN Name=ROC9; Synonyms=GL2-9; OrderedLocusNames=Os01g0760800, LOC_Os01g55549;
GN ORFNames=P0460E08.22, P0512C01.11;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 96-232.
RA Ito M., Sentoku N., Nishimura A., Hong S.-K., Sato Y., Matsuoka M.;
RT "The roles of rice GL2-type homeobox genes in epidermis differentiation.";
RL Submitted (JAN-2003) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Probable transcription factor. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the HD-ZIP homeobox family. Class IV subfamily.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAB61212.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAF06232.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP003256; BAB61212.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP003274; BAD87344.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF06232.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014957; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AB101652; BAC77162.1; -; mRNA.
DR AlphaFoldDB; Q5JMF3; -.
DR SMR; Q5JMF3; -.
DR STRING; 4530.OS01T0760800-00; -.
DR PaxDb; Q5JMF3; -.
DR PRIDE; Q5JMF3; -.
DR eggNOG; ENOG502QUI1; Eukaryota.
DR HOGENOM; CLU_118408_0_0_1; -.
DR InParanoid; Q5JMF3; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IEA:InterPro.
DR GO; GO:0008289; F:lipid binding; IEA:InterPro.
DR CDD; cd00086; homeodomain; 1.
DR Gene3D; 3.30.530.20; -; 1.
DR InterPro; IPR042160; GLABRA2/ANL2/PDF2/ATML1-like.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017970; Homeobox_CS.
DR InterPro; IPR001356; Homeobox_dom.
DR InterPro; IPR023393; START-like_dom_sf.
DR InterPro; IPR002913; START_lipid-bd_dom.
DR PANTHER; PTHR45654; PTHR45654; 1.
DR Pfam; PF00046; Homeodomain; 1.
DR Pfam; PF01852; START; 1.
DR SMART; SM00389; HOX; 1.
DR SMART; SM00234; START; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR PROSITE; PS00027; HOMEOBOX_1; 1.
DR PROSITE; PS50071; HOMEOBOX_2; 1.
DR PROSITE; PS50848; START; 1.
PE 2: Evidence at transcript level;
KW Coiled coil; DNA-binding; Homeobox; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..816
FT /note="Homeobox-leucine zipper protein ROC9"
FT /id="PRO_0000331747"
FT DOMAIN 302..541
FT /note="START"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00197"
FT DNA_BIND 95..154
FT /note="Homeobox"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00108"
FT REGION 26..104
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 265..296
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 149..182
FT /evidence="ECO:0000255"
FT CONFLICT 152..154
FT /note="Missing (in Ref. 5; BAC77162)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 816 AA; 88639 MW; 83782DC2DE1A191E CRC64;
MGTNRPRPRT KDFFAAPALS LTLAGVFGRK NGPAASGGDG VEEGDEEVQA AGEAAVEISS
ENAGPGCRQS QSGGGSGEDG GHDDDDGEGS NKKRRRKNYH RHTAEQIRIM EALFKESPHP
DERQRQQVSK QLGLSARQVK FWFQNRRTQI KAVQERHENS LLKSELEKLQ DEHRAMRELA
KKPSRCLNCG VVATSSDAAA AATAADTREQ RLRLEKAKLK AEVCMPPPRS RARPFRCATL
QDTDSGELAM LNLFQIERLR GTPGKSAADG IASPPCSASA GAMQTNSRSP PLHDHDGGFL
RHDDDKPRIL ELATRALDEL VGMCSSGEPV WVRGVETGRD ILNYDEYVRL FRRDHGGSGD
QMAGWTVEAS RECGLVYLDT MHLVHTFMDV DKWKDLFPTM ISKAATLEMI SNREDDGRDG
VLQLMYAELQ TLTPMVPTRE LYFARYCKKL AAERWAIVDV SFDESETGVH ASSAVRCWKN
PSGCLIEEQN NGRCKMTWVE HTRCRRCTVA PLYRAVTASG VAFGARRWVA ALQLQCERMV
FAVATNVPTR DSTGVSTLAG RRSVLKLAHR MTSSLCRTTG GSCDMAWRRA PKGGSGGGGD
DDIWLTSREN AGDDPGEPQG LIACAAASTW LPVNPTALLD LLRDESRRPE WDVMLPGKSV
QSRVNLAKGK DRTNCVTAYA ARPEEEEERG GKWVLQDVCT NPCESTIAYA AIDAAALQPV
IAGHDSSGVH LLPCGFISVM PDGLESKPAV ITASRRGGEA SGAGSLVTVA FQVPASPSAA
AATLSPDSVE AVTVLVSSTL RNIRKALGCD SCEEEF
