ROLL9_ORYSJ
ID ROLL9_ORYSJ Reviewed; 532 AA.
AC Q0J235; A0A0N7KQR2; B6V8F2; Q6H494;
DT 03-MAY-2011, integrated into UniProtKB/Swiss-Prot.
DT 03-MAY-2011, sequence version 2.
DT 03-AUG-2022, entry version 88.
DE RecName: Full=Probable transcription factor RL9 {ECO:0000305};
DE AltName: Full=Protein ROLLED LEAF 9 {ECO:0000303|PubMed:18594992};
DE AltName: Full=Protein SHALLOT-LIKE 1 {ECO:0000303|PubMed:19304938};
GN Name=RL9 {ECO:0000303|PubMed:18594992};
GN Synonyms=SLL1 {ECO:0000303|PubMed:19304938};
GN OrderedLocusNames=Os09g0395300 {ECO:0000312|EMBL:BAT07930.1},
GN LOC_Os09g23200 {ECO:0000305};
GN ORFNames=B1040D06.24 {ECO:0000312|EMBL:BAD26455.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 156-532, FUNCTION, SUBCELLULAR LOCATION,
RP TISSUE SPECIFICITY, AND DISRUPTION PHENOTYPE.
RC STRAIN=cv. Nipponbare;
RX PubMed=18594992; DOI=10.1007/s11103-008-9365-x;
RA Yan S., Yan C.J., Zeng X.H., Yang Y.C., Fang Y.W., Tian C.Y., Sun Y.W.,
RA Cheng Z.K., Gu M.H.;
RT "ROLLED LEAF 9, encoding a GARP protein, regulates the leaf abaxial cell
RT fate in rice.";
RL Plant Mol. Biol. 68:239-250(2008).
RN [5]
RP FUNCTION, TISSUE SPECIFICITY, AND DISRUPTION PHENOTYPE.
RX PubMed=19304938; DOI=10.1105/tpc.108.061457;
RA Zhang G.H., Xu Q., Zhu X.D., Qian Q., Xue H.W.;
RT "SHALLOT-LIKE1 is a KANADI transcription factor that modulates rice leaf
RT rolling by regulating leaf abaxial cell development.";
RL Plant Cell 21:719-735(2009).
CC -!- FUNCTION: Probable transcription factor that regulates abaxial identity
CC during leaf development (PubMed:18594992). Modulates leaf rolling by
CC regulating the programmed cell death (PCD) of abaxial mesophyll and
CC sclerenchyma cells during leaf development (PubMed:19304938).
CC {ECO:0000269|PubMed:18594992, ECO:0000269|PubMed:19304938}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:18594992}.
CC -!- TISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers
CC (PubMed:18594992). Expressed in stems, anthers of young or mature
CC flowers, pistil tips, glumes, vascular tissues of mature seeds,
CC coleoptile and embryonic root of germinating seedlings, root vascular
CC tissues, leaf veins and leaf sheaths, guard cells, and leaf tracheal
CC elements (PubMed:19304938). {ECO:0000269|PubMed:18594992,
CC ECO:0000269|PubMed:19304938}.
CC -!- DISRUPTION PHENOTYPE: Rolled inward leaves like a cylinder at mature
CC stage (PubMed:18594992). Narrow, extremely rolled and dark-green leaves
CC (PubMed:19304938). Malformed spikelets with low seed sets
CC (PubMed:18594992). Slight delay in heading date (PubMed:18594992).
CC Disordered and irregular arrangement of chloroplast grana lamellae
CC (PubMed:18594992). Abnormal sclerenchymatous cell development in the
CC abaxial cell layers, altered mesophyll cell distribution, increased
CC amounts of chlorophyll, and enhanced photosynthesis (PubMed:19304938).
CC Altered seed morphology, and reduced root number and root length
CC (PubMed:19304938). {ECO:0000269|PubMed:18594992,
CC ECO:0000269|PubMed:19304938}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAD26455.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAF25011.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAT07930.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP005904; BAD26455.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008215; BAF25011.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014965; BAT07930.1; ALT_SEQ; Genomic_DNA.
DR EMBL; FJ268747; ACJ02361.1; -; Genomic_DNA.
DR EMBL; FJ268748; ACJ02362.1; -; mRNA.
DR AlphaFoldDB; Q0J235; -.
DR SMR; Q0J235; -.
DR STRING; 4530.OS09T0395300-00; -.
DR PaxDb; Q0J235; -.
DR PRIDE; Q0J235; -.
DR EnsemblPlants; Os09t0395300-01; Os09t0395300-01; Os09g0395300.
DR Gramene; Os09t0395300-01; Os09t0395300-01; Os09g0395300.
DR eggNOG; ENOG502QQZR; Eukaryota.
DR HOGENOM; CLU_047766_4_1_1; -.
DR InParanoid; Q0J235; -.
DR PlantReactome; R-OSA-9627657; Regulation of leaf development.
DR Proteomes; UP000000763; Chromosome 9.
DR Proteomes; UP000059680; Chromosome 9.
DR Genevisible; Q0J235; OS.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IBA:GO_Central.
DR GO; GO:0010158; P:abaxial cell fate specification; IMP:UniProtKB.
DR GO; GO:0010229; P:inflorescence development; IMP:UniProtKB.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IBA:GO_Central.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR044847; KAN_fam.
DR InterPro; IPR006447; Myb_dom_plants.
DR PANTHER; PTHR31496; PTHR31496; 1.
DR SUPFAM; SSF46689; SSF46689; 1.
DR TIGRFAMs; TIGR01557; myb_SHAQKYF; 1.
PE 2: Evidence at transcript level;
KW Developmental protein; Differentiation; DNA-binding; Nucleus;
KW Reference proteome; Transcription; Transcription regulation.
FT CHAIN 1..532
FT /note="Probable transcription factor RL9"
FT /id="PRO_0000408384"
FT DOMAIN 321..381
FT /note="HTH myb-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT DNA_BIND 352..377
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00625"
FT REGION 93..143
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 224..244
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 380..409
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 438..478
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 492..532
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 454..478
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 496..516
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 532 AA; 54267 MW; 3D23652808C32B1E CRC64;
MAMVRELELM TSWSNSMGRH RYPTRILVDS FGHKCSASDK GVWTSCSIRA PLQGRGSFRR
GANIRFGSLP SSAAVATSGG GRGGGGVVVG GGGGDPWRRL DGSTASTELS LSPPPAQAAG
GGGGGGGADA LPWRHRPSPP SSAVATTSAA AAAALMAPMM LQPLDAGGGA SAPPPPIRGI
PIYNGPGGFP FLQPSPTAGD VGHHHHHHPK MGFYSSYHHP STWPSTSPSP LAAPPGAASS
PLDPTAAFLS SPHHRMLSAA SGRLNGMLSV SDTLRSYGVP GAAAPGVIGG AHHHHHHLHG
GQPFVGALAS RFMPKLPAKR SMRAPRMRWT STLHARFVHA VELLGGHERA TPKSVLELMD
VKDLTLAHVK SHLQMYRTVK STDKPAASSG PADGGSGDEE FAGGGQAASG GGDSMCLRGG
GGGGVAAAAF AEHGRSASEG AASSVGGGGG GDMDQSSAGN TSTTRWSNSS RDPWLSSNSC
NMDAHRSVGL SSPIENLEPC RSSSSQVSNH ELSSPSLEFT LGRPDWHGAD HD
