RPA12_BOVIN
ID RPA12_BOVIN Reviewed; 123 AA.
AC Q1RMP0;
DT 11-JUL-2006, integrated into UniProtKB/Swiss-Prot.
DT 16-MAY-2006, sequence version 1.
DT 03-AUG-2022, entry version 104.
DE RecName: Full=DNA-directed RNA polymerase I subunit RPA12 {ECO:0000250|UniProtKB:Q9P1U0};
DE AltName: Full=DNA-directed RNA polymerase I subunit H {ECO:0000250|UniProtKB:Q9P1U0};
GN Name=POLR1H {ECO:0000250|UniProtKB:Q9P1U0};
OS Bos taurus (Bovine).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae;
OC Bovinae; Bos.
OX NCBI_TaxID=9913;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=Hereford; TISSUE=Thymus;
RG NIH - Mammalian Gene Collection (MGC) project;
RL Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC Component of RNA polymerase I which synthesizes ribosomal RNA
CC precursors.
CC -!- SUBUNIT: Component of the RNA polymerase I (Pol I) complex consisting
CC of at least 13 subunits.
CC -!- SUBCELLULAR LOCATION: Nucleus, nucleolus
CC {ECO:0000250|UniProtKB:P32529}.
CC -!- SIMILARITY: Belongs to the archaeal RpoM/eukaryotic RPA12/RPB9/RPC11
CC RNA polymerase family. {ECO:0000305}.
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DR EMBL; BC114799; AAI14800.1; -; mRNA.
DR RefSeq; NP_001039865.1; NM_001046400.2.
DR AlphaFoldDB; Q1RMP0; -.
DR SMR; Q1RMP0; -.
DR STRING; 9913.ENSBTAP00000042491; -.
DR PaxDb; Q1RMP0; -.
DR Ensembl; ENSBTAT00000045075; ENSBTAP00000042491; ENSBTAG00000031792.
DR GeneID; 535288; -.
DR KEGG; bta:535288; -.
DR CTD; 30834; -.
DR VEuPathDB; HostDB:ENSBTAG00000031792; -.
DR VGNC; VGNC:37362; POLR1H.
DR eggNOG; KOG2907; Eukaryota.
DR GeneTree; ENSGT00390000008126; -.
DR HOGENOM; CLU_093932_1_2_1; -.
DR InParanoid; Q1RMP0; -.
DR OMA; EMQYHTL; -.
DR OrthoDB; 1456544at2759; -.
DR TreeFam; TF313881; -.
DR Reactome; R-BTA-5250924; B-WICH complex positively regulates rRNA expression.
DR Reactome; R-BTA-73762; RNA Polymerase I Transcription Initiation.
DR Proteomes; UP000009136; Chromosome 23.
DR Bgee; ENSBTAG00000031792; Expressed in oocyte and 107 other tissues.
DR GO; GO:0005736; C:RNA polymerase I complex; IBA:GO_Central.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0006379; P:mRNA cleavage; IEA:InterPro.
DR GO; GO:0006363; P:termination of RNA polymerase I transcription; IBA:GO_Central.
DR CDD; cd10507; Zn-ribbon_RPA12; 1.
DR InterPro; IPR019761; DNA-dir_RNA_pol-M_15_CS.
DR InterPro; IPR012164; Rpa12/Rpb9/Rpc10/TFS.
DR InterPro; IPR034004; Zn_ribbon_RPA12_C.
DR InterPro; IPR001222; Znf_TFIIS.
DR PANTHER; PTHR11239; PTHR11239; 1.
DR Pfam; PF01096; TFIIS_C; 1.
DR PIRSF; PIRSF005586; RNApol_RpoM; 1.
DR SMART; SM00440; ZnF_C2C2; 1.
DR PROSITE; PS01030; RNA_POL_M_15KD; 1.
DR PROSITE; PS00466; ZF_TFIIS_1; 1.
DR PROSITE; PS51133; ZF_TFIIS_2; 1.
PE 2: Evidence at transcript level;
KW DNA-directed RNA polymerase; Metal-binding; Nucleus; Reference proteome;
KW Transcription; Zinc; Zinc-finger.
FT CHAIN 1..123
FT /note="DNA-directed RNA polymerase I subunit RPA12"
FT /id="PRO_0000245339"
FT ZN_FING 17..38
FT /note="C4-type"
FT /evidence="ECO:0000255"
FT ZN_FING 80..120
FT /note="TFIIS-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00472"
FT BINDING 84
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00472"
FT BINDING 87
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00472"
FT BINDING 112
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00472"
FT BINDING 115
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00472"
SQ SEQUENCE 123 AA; 13505 MW; 30678EE256CB9142 CRC64;
MDLAGICSSF QSDLDFCPDC GSVLPLPGVQ DAVACTRCGF SINVRDFEGK VVKTSVVFNK
LGTAMPLSME EGPEFQGPVV DRRCSRCGHE GMAYHTRQMR SADEGQTVFY TCTNCKFQEK
EDS