RPAB3_CAEBR
ID RPAB3_CAEBR Reviewed; 148 AA.
AC A8XT81;
DT 03-MAR-2009, integrated into UniProtKB/Swiss-Prot.
DT 15-JAN-2008, sequence version 1.
DT 03-AUG-2022, entry version 74.
DE RecName: Full=Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 {ECO:0000250|UniProtKB:Q19826};
DE Short=RNA polymerases I, II, and III subunit ABC3 {ECO:0000250|UniProtKB:Q19826};
DE AltName: Full=RNA polymerase B subunit 8;
DE Short=RPB8;
GN Name=rpb-8 {ECO:0000312|EMBL:CAP35684.1}; ORFNames=CBG18189;
OS Caenorhabditis briggsae.
OC Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
OC Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
OC Caenorhabditis.
OX NCBI_TaxID=6238;
RN [1] {ECO:0000312|EMBL:CAP35684.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=AF16 {ECO:0000312|EMBL:CAP35684.1};
RX PubMed=14624247; DOI=10.1371/journal.pbio.0000045;
RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., Chen N.,
RA Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A., D'Eustachio P.,
RA Fitch D.H.A., Fulton L.A., Fulton R.E., Griffiths-Jones S., Harris T.W.,
RA Hillier L.W., Kamath R., Kuwabara P.E., Mardis E.R., Marra M.A.,
RA Miner T.L., Minx P., Mullikin J.C., Plumb R.W., Rogers J., Schein J.E.,
RA Sohrmann M., Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA Durbin R.M., Waterston R.H.;
RT "The genome sequence of Caenorhabditis briggsae: a platform for comparative
RT genomics.";
RL PLoS Biol. 1:166-192(2003).
CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC Common component of RNA polymerases I, II and III which synthesize
CC ribosomal RNA precursors, mRNA precursors and many functional non-
CC coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively
CC (By similarity). {ECO:0000250|UniProtKB:P52434}.
CC -!- SUBUNIT: Component of the RNA polymerase I (Pol I), RNA polymerase II
CC (Pol II) and RNA polymerase III (Pol III) complexes consisting of at
CC least 13, 12 and 17 subunits, respectively. Directly interacts with
CC POLR2A (By similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250|UniProtKB:P52434}.
CC -!- SIMILARITY: Belongs to the eukaryotic RPB8 RNA polymerase subunit
CC family. {ECO:0000255}.
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DR EMBL; HE600936; CAP35684.1; -; Genomic_DNA.
DR RefSeq; XP_002642215.1; XM_002642169.1.
DR AlphaFoldDB; A8XT81; -.
DR SMR; A8XT81; -.
DR STRING; 6238.CBG18189; -.
DR EnsemblMetazoa; CBG18189.1; CBG18189.1; WBGene00037654.
DR GeneID; 8584211; -.
DR KEGG; cbr:CBG_18189; -.
DR CTD; 8584211; -.
DR WormBase; CBG18189; CBP19241; WBGene00037654; Cbr-rpb-8.
DR eggNOG; KOG3400; Eukaryota.
DR HOGENOM; CLU_103864_1_1_1; -.
DR InParanoid; A8XT81; -.
DR OMA; TINAYVS; -.
DR OrthoDB; 1504067at2759; -.
DR Proteomes; UP000008549; Chromosome III.
DR GO; GO:0005736; C:RNA polymerase I complex; IBA:GO_Central.
DR GO; GO:0005665; C:RNA polymerase II, core complex; IBA:GO_Central.
DR GO; GO:0005666; C:RNA polymerase III complex; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro.
DR Gene3D; 2.40.50.140; -; 1.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR005570; RNA_pol_Rpb8.
DR PANTHER; PTHR10917; PTHR10917; 1.
DR Pfam; PF03870; RNA_pol_Rpb8; 1.
DR PIRSF; PIRSF000779; RNA_pol_Rpb8; 1.
DR SMART; SM00658; RPOL8c; 1.
DR SUPFAM; SSF50249; SSF50249; 1.
PE 3: Inferred from homology;
KW DNA-binding; DNA-directed RNA polymerase; Nucleus; Reference proteome;
KW Transcription.
FT CHAIN 1..148
FT /note="Probable DNA-directed RNA polymerases I, II, and III
FT subunit RPABC3"
FT /id="PRO_0000365632"
FT REGION 16..40
FT /note="Non-specific ssDNA binding"
FT /evidence="ECO:0000250"
SQ SEQUENCE 148 AA; 17004 MW; C2DA4ACA92A2EC21 CRC64;
MAGIIFDDMF SVKSVDPDGK KFDRVSRYFC DAESFKMELI IDINSQIYPL KQNDKFRLVL
ATTLREDGLA DEGEYDPKAE YPRIKQYEYV MYGKVYRLED DDSGTDGGQL AAYASFGGLL
MRLKGEAINL HGFEVDMNLY LLMKKTDF