ID   RPAP3_CHICK             Reviewed;         665 AA.
AC   Q5ZKQ3;
DT   11-SEP-2007, integrated into UniProtKB/Swiss-Prot.
DT   23-NOV-2004, sequence version 1.
DT   03-AUG-2022, entry version 93.
DE   RecName: Full=RNA polymerase II-associated protein 3;
GN   Name=RPAP3; ORFNames=RCJMB04_9l4;
OS   Gallus gallus (Chicken).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
OC   Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae;
OC   Phasianinae; Gallus.
OX   NCBI_TaxID=9031;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=CB; TISSUE=Bursa of Fabricius;
RX   PubMed=15642098; DOI=10.1186/gb-2004-6-1-r6;
RA   Caldwell R.B., Kierzek A.M., Arakawa H., Bezzubov Y., Zaim J., Fiedler P.,
RA   Kutter S., Blagodatski A., Kostovska D., Koter M., Plachy J., Carninci P.,
RA   Hayashizaki Y., Buerstedde J.-M.;
RT   "Full-length cDNAs from chicken bursal lymphocytes to facilitate gene
RT   function analysis.";
RL   Genome Biol. 6:R6.1-R6.9(2005).
CC   -!- FUNCTION: May for an interface between the RNA polymerase II enzyme and
CC       chaperone/scaffolding protein. {ECO:0000250|UniProtKB:Q9H6T3}.
CC   -!- SIMILARITY: Belongs to the RPAP3 family. {ECO:0000305}.
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DR   EMBL; AJ720031; CAG31690.1; -; mRNA.
DR   RefSeq; NP_001006231.1; NM_001006231.1.
DR   AlphaFoldDB; Q5ZKQ3; -.
DR   SMR; Q5ZKQ3; -.
DR   STRING; 9031.ENSGALP00000041777; -.
DR   PaxDb; Q5ZKQ3; -.
DR   PRIDE; Q5ZKQ3; -.
DR   GeneID; 417811; -.
DR   KEGG; gga:417811; -.
DR   CTD; 79657; -.
DR   VEuPathDB; HostDB:geneid_417811; -.
DR   eggNOG; KOG4648; Eukaryota.
DR   InParanoid; Q5ZKQ3; -.
DR   OrthoDB; 1617844at2759; -.
DR   PhylomeDB; Q5ZKQ3; -.
DR   PRO; PR:Q5ZKQ3; -.
DR   Proteomes; UP000000539; Unplaced.
DR   GO; GO:0101031; C:chaperone complex; IBA:GO_Central.
DR   Gene3D; 1.25.40.10; -; 2.
DR   InterPro; IPR025986; RPAP3-like_C.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   InterPro; IPR001440; TPR_1.
DR   InterPro; IPR019734; TPR_repeat.
DR   Pfam; PF13877; RPAP3_C; 1.
DR   Pfam; PF00515; TPR_1; 1.
DR   Pfam; PF13176; TPR_7; 2.
DR   SMART; SM00028; TPR; 6.
DR   SUPFAM; SSF48452; SSF48452; 2.
DR   PROSITE; PS50005; TPR; 5.
DR   PROSITE; PS50293; TPR_REGION; 1.
PE   2: Evidence at transcript level;
KW   Reference proteome; Repeat; TPR repeat.
FT   CHAIN           1..665
FT                   /note="RNA polymerase II-associated protein 3"
FT                   /id="PRO_0000302797"
FT   REPEAT          8..41
FT                   /note="TPR 1"
FT   REPEAT          133..166
FT                   /note="TPR 2"
FT   REPEAT          168..200
FT                   /note="TPR 3"
FT   REPEAT          201..234
FT                   /note="TPR 4"
FT   REPEAT          283..316
FT                   /note="TPR 5"
FT   REPEAT          318..350
FT                   /note="TPR 6"
FT   REPEAT          351..384
FT                   /note="TPR 7"
FT   REGION          38..83
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          107..127
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   665 AA;  75994 MW;  6AAAF9F0B3FD5DF9 CRC64;
     MTASNKALEL QLQMKQNAEE LQDFMRELES WEKDIKEVDS ELRKQSGVSE ENLPPIRNKT
     FKKKKKSKTK VPSKTTTEEN KKNKIKSYDY EAWGKLDVDK ILEELDKDDS THDSVSPESD
     SEEDGIHIDK EKALAEKEKG NKYFKQGNFD EAIKCYTRGM HSDPFNPVLP TNRASAFYRM
     KKFSVAESDC NLALALDKNY TKAYARRGAA RFALKNFQGA KEDYEKVLEL DANNYEAKNE
     LKKIEQALSS ESSEQKEFEE AVRSELTENE RRCIEEEQLK QKAVTEKDLG NGYFKEGKYE
     AAIECYTRGI AADGTNALLP ANRAMAYLKI QKYEEAENDC TQALLLDASY SKAFARRGAA
     RVALGKLKEA MQDFEAVLKL EPGNKQAINE LTKIRNELAE KEQSCHEEYP AVLIKESEIK
     NIVKLTHNPL NLKSTKPLRR IAVEEVDDDV LNSDFSSSTS LVNNWKNSVN IETTENLDQD
     DQLTSMDIPK AKQLKIEEIT DVSSPQLPAG AKGVSSVLHP SMNKQIEREN KASFRSASPV
     PAIPANSFQL ESDFRKLKDC PEKMYLYLKQ IEPSIYPKLF QKSLDPDLFN QILRILHDFY
     IEKEEPSLIL EILQRLSELK RFDMAVMFMS GSEKKITQVL FSHMKHMGLK DTSVEQLEKK
     YAVFS