RPB7L_ARATH
ID RPB7L_ARATH Reviewed; 200 AA.
AC Q6NML5; O23308;
DT 18-SEP-2013, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 120.
DE RecName: Full=DNA-directed RNA polymerase subunit 7-like protein;
GN Name=NRPB7L; OrderedLocusNames=At4g14520; ORFNames=dl3300w;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9461215; DOI=10.1038/35140;
RA Bevan M., Bancroft I., Bent E., Love K., Goodman H.M., Dean C.,
RA Bergkamp R., Dirkse W., van Staveren M., Stiekema W., Drost L., Ridley P.,
RA Hudson S.-A., Patel K., Murphy G., Piffanelli P., Wedler H., Wedler E.,
RA Wambutt R., Weitzenegger T., Pohl T., Terryn N., Gielen J., Villarroel R.,
RA De Clercq R., van Montagu M., Lecharny A., Aubourg S., Gy I., Kreis M.,
RA Lao N., Kavanagh T., Hempel S., Kotter P., Entian K.-D., Rieger M.,
RA Schaefer M., Funk B., Mueller-Auer S., Silvey M., James R., Monfort A.,
RA Pons A., Puigdomenech P., Douka A., Voukelatou E., Milioni D.,
RA Hatzopoulos P., Piravandi E., Obermaier B., Hilbert H., Duesterhoeft A.,
RA Moores T., Jones J.D.G., Eneva T., Palme K., Benes V., Rechmann S.,
RA Ansorge W., Cooke R., Berger C., Delseny M., Voet M., Volckaert G.,
RA Mewes H.-W., Klosterman S., Schueller C., Chalwatzis N.;
RT "Analysis of 1.9 Mb of contiguous sequence from chromosome 4 of Arabidopsis
RT thaliana.";
RL Nature 391:485-488(1998).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Kim C.J., Chen H., Cheuk R., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (FEB-2004) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP NOMENCLATURE.
RX PubMed=19110459; DOI=10.1016/j.molcel.2008.12.015;
RA Ream T.S., Haag J.R., Wierzbicki A.T., Nicora C.D., Norbeck A.D., Zhu J.K.,
RA Hagen G., Guilfoyle T.J., Pasa-Tolic L., Pikaard C.S.;
RT "Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal
RT their origins as specialized forms of RNA polymerase II.";
RL Mol. Cell 33:192-203(2009).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the eukaryotic RPB7/RPC8 RNA polymerase subunit
CC family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAB10231.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC Sequence=CAB78494.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; Z97336; CAB10231.1; ALT_INIT; Genomic_DNA.
DR EMBL; AL161539; CAB78494.1; ALT_INIT; Genomic_DNA.
DR EMBL; CP002687; AEE83454.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE83455.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE83456.1; -; Genomic_DNA.
DR EMBL; CP002687; ANM66735.1; -; Genomic_DNA.
DR EMBL; CP002687; ANM66736.1; -; Genomic_DNA.
DR EMBL; CP002687; ANM66737.1; -; Genomic_DNA.
DR EMBL; CP002687; ANM66738.1; -; Genomic_DNA.
DR EMBL; CP002687; ANM66739.1; -; Genomic_DNA.
DR EMBL; CP002687; ANM66740.1; -; Genomic_DNA.
DR EMBL; CP002687; ANM66741.1; -; Genomic_DNA.
DR EMBL; CP002687; ANM66742.1; -; Genomic_DNA.
DR EMBL; BT010936; AAR24714.1; -; mRNA.
DR EMBL; BT011642; AAS47648.1; -; mRNA.
DR EMBL; AK226530; BAE98669.1; -; mRNA.
DR PIR; E71407; E71407.
DR RefSeq; NP_001190729.1; NM_001203800.2.
DR RefSeq; NP_001328613.1; NM_001340937.1.
DR RefSeq; NP_001328614.1; NM_001340936.1.
DR RefSeq; NP_001328615.1; NM_001340941.1.
DR RefSeq; NP_001328616.1; NM_001340940.1.
DR RefSeq; NP_001328617.1; NM_001340939.1.
DR RefSeq; NP_001328618.1; NM_001340938.1.
DR RefSeq; NP_001328619.1; NM_001340943.1.
DR RefSeq; NP_001328620.1; NM_001340942.1.
DR RefSeq; NP_193188.2; NM_117532.4.
DR RefSeq; NP_849385.1; NM_179054.4.
DR AlphaFoldDB; Q6NML5; -.
DR SMR; Q6NML5; -.
DR BioGRID; 12396; 1.
DR STRING; 3702.AT4G14520.3; -.
DR PaxDb; Q6NML5; -.
DR PRIDE; Q6NML5; -.
DR ProteomicsDB; 228216; -.
DR DNASU; 827099; -.
DR EnsemblPlants; AT4G14520.1; AT4G14520.1; AT4G14520.
DR EnsemblPlants; AT4G14520.10; AT4G14520.10; AT4G14520.
DR EnsemblPlants; AT4G14520.11; AT4G14520.11; AT4G14520.
DR EnsemblPlants; AT4G14520.2; AT4G14520.2; AT4G14520.
DR EnsemblPlants; AT4G14520.3; AT4G14520.3; AT4G14520.
DR EnsemblPlants; AT4G14520.4; AT4G14520.4; AT4G14520.
DR EnsemblPlants; AT4G14520.5; AT4G14520.5; AT4G14520.
DR EnsemblPlants; AT4G14520.6; AT4G14520.6; AT4G14520.
DR EnsemblPlants; AT4G14520.7; AT4G14520.7; AT4G14520.
DR EnsemblPlants; AT4G14520.8; AT4G14520.8; AT4G14520.
DR EnsemblPlants; AT4G14520.9; AT4G14520.9; AT4G14520.
DR GeneID; 827099; -.
DR Gramene; AT4G14520.1; AT4G14520.1; AT4G14520.
DR Gramene; AT4G14520.10; AT4G14520.10; AT4G14520.
DR Gramene; AT4G14520.11; AT4G14520.11; AT4G14520.
DR Gramene; AT4G14520.2; AT4G14520.2; AT4G14520.
DR Gramene; AT4G14520.3; AT4G14520.3; AT4G14520.
DR Gramene; AT4G14520.4; AT4G14520.4; AT4G14520.
DR Gramene; AT4G14520.5; AT4G14520.5; AT4G14520.
DR Gramene; AT4G14520.6; AT4G14520.6; AT4G14520.
DR Gramene; AT4G14520.7; AT4G14520.7; AT4G14520.
DR Gramene; AT4G14520.8; AT4G14520.8; AT4G14520.
DR Gramene; AT4G14520.9; AT4G14520.9; AT4G14520.
DR KEGG; ath:AT4G14520; -.
DR Araport; AT4G14520; -.
DR TAIR; locus:2129855; AT4G14520.
DR eggNOG; KOG3298; Eukaryota.
DR HOGENOM; CLU_085878_3_0_1; -.
DR InParanoid; Q6NML5; -.
DR OMA; MLCEVEC; -.
DR OrthoDB; 1140388at2759; -.
DR PhylomeDB; Q6NML5; -.
DR PRO; PR:Q6NML5; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q6NML5; baseline and differential.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003697; F:single-stranded DNA binding; IBA:GO_Central.
DR GO; GO:0003727; F:single-stranded RNA binding; IBA:GO_Central.
DR GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
DR Gene3D; 2.40.50.140; -; 1.
DR Gene3D; 3.30.1490.120; -; 1.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR036898; RNA_pol_Rpb7-like_N_sf.
DR InterPro; IPR045113; Rpb7-like.
DR InterPro; IPR022967; S1_dom.
DR PANTHER; PTHR12709; PTHR12709; 1.
DR SMART; SM00316; S1; 1.
DR SUPFAM; SSF50249; SSF50249; 1.
PE 2: Evidence at transcript level;
KW DNA-directed RNA polymerase; Nucleus; Reference proteome; Transcription.
FT CHAIN 1..200
FT /note="DNA-directed RNA polymerase subunit 7-like protein"
FT /id="PRO_0000423335"
SQ SEQUENCE 200 AA; 22749 MW; C6DD1EF286296664 CRC64;
MFSEVEMARD VAICAKHLNG QSPHQPILCR LLQDLIHEKA CREHGFYLGI TALKSIGNNK
NNNIDNENNH QAKILTFPVS FTCRTFLPAR GDILQGTVKK VLWNGAFIRS GPLRYAYLSL
LKMPHYHYVH SPLSEDEKPH FQKDDLSKIA VGVVVRFQVL AVRFKERPHK RRNDYYVLAT
LEGNGSFGPI SLTGSDEPYM
