RPBAL_ARATH
ID RPBAL_ARATH Reviewed; 71 AA.
AC Q9SYA6;
DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 149.
DE RecName: Full=DNA-directed RNA polymerase subunit 10-like protein {ECO:0000303|PubMed:19110459};
DE AltName: Full=ABC10 {ECO:0000303|PubMed:19110459};
DE AltName: Full=DNA-directed RNA polymerase III subunit L {ECO:0000303|PubMed:19110459};
DE AltName: Full=DNA-directed RNA polymerases I, II, and III subunit RPABC5 {ECO:0000303|PubMed:19110459};
DE Short=RNA polymerases I, II, and III subunit ABC5 {ECO:0000303|PubMed:19110459};
DE AltName: Full=RPB10 homolog {ECO:0000303|PubMed:19110459};
GN Name=NRPB10L {ECO:0000303|PubMed:19110459};
GN OrderedLocusNames=At1g61700 {ECO:0000312|Araport:AT1G61700};
GN ORFNames=T13M11.6 {ECO:0000312|EMBL:AAD21426.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NOMENCLATURE.
RX PubMed=19110459; DOI=10.1016/j.molcel.2008.12.015;
RA Ream T.S., Haag J.R., Wierzbicki A.T., Nicora C.D., Norbeck A.D., Zhu J.K.,
RA Hagen G., Guilfoyle T.J., Pasa-Tolic L., Pikaard C.S.;
RT "Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal
RT their origins as specialized forms of RNA polymerase II.";
RL Mol. Cell 33:192-203(2009).
RN [4]
RP INTERACTION WITH IYO.
RX PubMed=21620701; DOI=10.1016/j.cub.2011.04.041;
RA Sanmartin M., Sauer M., Munoz A., Zouhar J., Ordonez A., van de Ven W.T.,
RA Caro E., de la Paz Sanchez M., Raikhel N.V., Gutierrez C.,
RA Sanchez-Serrano J.J., Rojo E.;
RT "A molecular switch for initiating cell differentiation in Arabidopsis.";
RL Curr. Biol. 21:999-1008(2011).
CC -!- SUBUNIT: Interacts with IYO (PubMed:21620701).
CC {ECO:0000269|PubMed:21620701}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the archaeal Rpo10/eukaryotic RPB10 RNA
CC polymerase subunit family. {ECO:0000305}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AC005882; AAD21426.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE33877.1; -; Genomic_DNA.
DR PIR; F96642; F96642.
DR RefSeq; NP_176363.1; NM_104852.4.
DR AlphaFoldDB; Q9SYA6; -.
DR SMR; Q9SYA6; -.
DR BioGRID; 27690; 49.
DR STRING; 3702.AT1G61700.1; -.
DR PaxDb; Q9SYA6; -.
DR PRIDE; Q9SYA6; -.
DR ProteomicsDB; 228243; -.
DR EnsemblPlants; AT1G61700.1; AT1G61700.1; AT1G61700.
DR GeneID; 842467; -.
DR Gramene; AT1G61700.1; AT1G61700.1; AT1G61700.
DR KEGG; ath:AT1G61700; -.
DR Araport; AT1G61700; -.
DR TAIR; locus:2195718; AT1G61700.
DR eggNOG; KOG3497; Eukaryota.
DR HOGENOM; CLU_143122_2_1_1; -.
DR InParanoid; Q9SYA6; -.
DR OMA; AFHLERF; -.
DR OrthoDB; 1639063at2759; -.
DR PhylomeDB; Q9SYA6; -.
DR PRO; PR:Q9SYA6; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9SYA6; baseline and differential.
DR Genevisible; Q9SYA6; AT.
DR GO; GO:0005736; C:RNA polymerase I complex; IBA:GO_Central.
DR GO; GO:0005665; C:RNA polymerase II, core complex; IBA:GO_Central.
DR GO; GO:0005666; C:RNA polymerase III complex; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IBA:GO_Central.
DR GO; GO:0006360; P:transcription by RNA polymerase I; IBA:GO_Central.
DR GO; GO:0006366; P:transcription by RNA polymerase II; IBA:GO_Central.
DR GO; GO:0042797; P:tRNA transcription by RNA polymerase III; IBA:GO_Central.
DR HAMAP; MF_00250; RNApol_arch_Rpo10; 1.
DR InterPro; IPR023580; RNA_pol_su_RPB10.
DR InterPro; IPR020789; RNA_pol_suN_Zn-BS.
DR InterPro; IPR000268; RPABC5/Rpb10.
DR PANTHER; PTHR23431; PTHR23431; 1.
DR Pfam; PF01194; RNA_pol_N; 1.
DR PIRSF; PIRSF005653; RNA_pol_N/8_sub; 1.
DR SUPFAM; SSF46924; SSF46924; 1.
DR PROSITE; PS01112; RNA_POL_N_8KD; 1.
PE 1: Evidence at protein level;
KW DNA-directed RNA polymerase; Metal-binding; Nucleus; Reference proteome;
KW Transcription; Zinc.
FT CHAIN 1..71
FT /note="DNA-directed RNA polymerase subunit 10-like protein"
FT /id="PRO_0000121337"
FT BINDING 7
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000250"
FT BINDING 10
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000250"
FT BINDING 44
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000250"
FT BINDING 45
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000250"
SQ SEQUENCE 71 AA; 8173 MW; A5F5B5FA398B5F2F CRC64;
MIVPVRCFTC GKVIGNKWDT YLELLQADYA EGDALDALGL VRYCCRRMLM THVDLIEKLL
NYNTMEKSDP N
