RPOB1_NOCFA
ID RPOB1_NOCFA Reviewed; 1162 AA.
AC Q5YQP4;
DT 21-FEB-2006, integrated into UniProtKB/Swiss-Prot.
DT 23-NOV-2004, sequence version 1.
DT 03-AUG-2022, entry version 102.
DE RecName: Full=DNA-directed RNA polymerase subunit beta 1 {ECO:0000255|HAMAP-Rule:MF_01321};
DE Short=RNAP subunit beta 1 {ECO:0000255|HAMAP-Rule:MF_01321};
DE EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=RNA polymerase subunit beta 1 {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=Transcriptase subunit beta 1 {ECO:0000255|HAMAP-Rule:MF_01321};
GN Name=rpoB1 {ECO:0000255|HAMAP-Rule:MF_01321}; OrderedLocusNames=NFA_46460;
OS Nocardia farcinica (strain IFM 10152).
OC Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.
OX NCBI_TaxID=247156;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=IFM 10152;
RX PubMed=15466710; DOI=10.1073/pnas.0406410101;
RA Ishikawa J., Yamashita A., Mikami Y., Hoshino Y., Kurita H., Hotta K.,
RA Shiba T., Hattori M.;
RT "The complete genomic sequence of Nocardia farcinica IFM 10152.";
RL Proc. Natl. Acad. Sci. U.S.A. 101:14925-14930(2004).
CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000255|HAMAP-Rule:MF_01321};
CC -!- SUBUNIT: The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta'
CC and 1 omega subunit. When a sigma factor is associated with the core
CC the holoenzyme is formed, which can initiate transcription.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- SIMILARITY: Belongs to the RNA polymerase beta chain family.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
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DR EMBL; AP006618; BAD59497.1; -; Genomic_DNA.
DR RefSeq; WP_011211181.1; NC_006361.1.
DR AlphaFoldDB; Q5YQP4; -.
DR SMR; Q5YQP4; -.
DR STRING; 247156.NFA_46460; -.
DR EnsemblBacteria; BAD59497; BAD59497; NFA_46460.
DR GeneID; 61135250; -.
DR KEGG; nfa:NFA_46460; -.
DR eggNOG; COG0085; Bacteria.
DR HOGENOM; CLU_000524_4_3_11; -.
DR BioCyc; NFAR247156:NFA_RS23040-MON; -.
DR Proteomes; UP000006820; Chromosome.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0032549; F:ribonucleoside binding; IEA:InterPro.
DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR CDD; cd00653; RNA_pol_B_RPB2; 1.
DR Gene3D; 2.30.150.10; -; 1.
DR Gene3D; 2.40.270.10; -; 1.
DR Gene3D; 2.40.50.150; -; 1.
DR Gene3D; 3.90.1110.10; -; 1.
DR HAMAP; MF_01321; RNApol_bact_RpoB; 1.
DR InterPro; IPR042107; DNA-dir_RNA_pol_bsu_ext_1_sf.
DR InterPro; IPR019462; DNA-dir_RNA_pol_bsu_external_1.
DR InterPro; IPR015712; DNA-dir_RNA_pol_su2.
DR InterPro; IPR007120; DNA-dir_RNAP_su2_dom.
DR InterPro; IPR037033; DNA-dir_RNAP_su2_hyb_sf.
DR InterPro; IPR010243; RNA_pol_bsu_bac.
DR InterPro; IPR007121; RNA_pol_bsu_CS.
DR InterPro; IPR007644; RNA_pol_bsu_protrusion.
DR InterPro; IPR007642; RNA_pol_Rpb2_2.
DR InterPro; IPR037034; RNA_pol_Rpb2_2_sf.
DR InterPro; IPR007645; RNA_pol_Rpb2_3.
DR InterPro; IPR007641; RNA_pol_Rpb2_7.
DR InterPro; IPR014724; RNA_pol_RPB2_OB-fold.
DR PANTHER; PTHR20856; PTHR20856; 1.
DR Pfam; PF04563; RNA_pol_Rpb2_1; 1.
DR Pfam; PF04561; RNA_pol_Rpb2_2; 1.
DR Pfam; PF04565; RNA_pol_Rpb2_3; 1.
DR Pfam; PF10385; RNA_pol_Rpb2_45; 1.
DR Pfam; PF00562; RNA_pol_Rpb2_6; 1.
DR Pfam; PF04560; RNA_pol_Rpb2_7; 1.
DR TIGRFAMs; TIGR02013; rpoB; 1.
DR PROSITE; PS01166; RNA_POL_BETA; 1.
PE 3: Inferred from homology;
KW DNA-directed RNA polymerase; Nucleotidyltransferase; Reference proteome;
KW Transcription; Transferase.
FT CHAIN 1..1162
FT /note="DNA-directed RNA polymerase subunit beta 1"
FT /id="PRO_0000224084"
SQ SEQUENCE 1162 AA; 127879 MW; 68568FCF75BB094C CRC64;
MLEGRIVTVS SRTESPLAAP GVPGAPRRLS FARIREPLAV PGLLDIQTES FGWLIGAPDW
CARAAARGTE PVAGLAEVLA EISPIEDFAG TMSLTLSDPR FEEVKASVEE CKDKDLTYAA
PWFVTAEFVN NNTGEIKSQT VFMGDFPMMT AHGTFVVNGT ERVVVSQLVR SPGVYFDHAI
DKGSEKDVHS ARVIPSRGAW LEFDVDKRDT LGVRIDRKRR QPVTVLLKAL GWSAERIAER
FGFAPLIMAS LAKDNVAGTD DALLEIHRKL RPGEPPTKES AQNLLANLFF TEKRYDLARV
GRYKIDKKLG LRAPGAPRVL TEDDIAATIE YLVRLHAGER TMIAPGGVEV PVEVDDIDHF
GNRRVRTVGE LIQNQIRVGL SRMERVVRER MTTQDVEAIT PQSLMNIRPV VAAMKEFFGT
SQLSQFMDQR NPLASLTNKR RLSALGPGGL SRERAGLEVR DVHYSHYGRM CPIETPEGPN
IGLMGYLSVY ARVNPFGFVE TPYRRVVDGR VTDEVDYLTA DEEDRHVVAQ ANEPLDAEGR
FLAARIPVRR KNSEVELVDS AAVDYMDVSP RQMVSVATAM IPFLEHDDAN RALMGANMQR
QAVPLIRSEA PIVGTGMELR AAVDAGDVVV NEKAGVVEEV SADYVTVMAD DGTRKSYRMR
KFNRSNQGTC SNQRPIVDEG QRVEAGQVLA DGPCTENGEM ALGKNLLVAI MPWEGHNYED
AIILSQRLVE QDVLTSIHIE EHEIDARDTK LGAEEITRDI PNVSDEVLAD LDERGIVRIG
AEVRDGDILV GKVTPKGETE LTPEERLLRA IFGEKAREVR DTSLKVPHGE SGKVIGIRVF
SREDDDDLPP GVNELVRVYV AQKRKIQDGD KLAGRHGNKG VIGKILPTED MPFLPDGTPV
DIILNTHGVP RRMNIGQILE THLGWIGKAG WKVEGNPEWA KDLPEEMWEA PADSNIATPV
FDGAREEELT GLLGSTLPNR DGERMVDDNG KAVLFDGRSG EPFPYPVAVG YMYILKLHHL
VDDKIHARST GPYSMITQQP LGGKAQFGGQ RFGEMECWAM QAYGAAYTLQ ELLTIKSDDV
VGRVKVYEAI VKGDNIPEPG VPESFKVLLK ELQALCLNVE VLSAGAAVEL AHGVDDDHER
TAANLGINLS RAESITETEL SG