RPOB_AZOC5
ID RPOB_AZOC5 Reviewed; 1376 AA.
AC A8HTY8;
DT 08-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT 04-DEC-2007, sequence version 1.
DT 03-AUG-2022, entry version 79.
DE RecName: Full=DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
DE AltName: Full=Transcriptase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};
GN Name=rpoB {ECO:0000255|HAMAP-Rule:MF_01321}; OrderedLocusNames=AZC_0887;
OS Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / LMG
OS 6465 / NBRC 14845 / NCIMB 13405 / ORS 571).
OC Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales;
OC Xanthobacteraceae; Azorhizobium.
OX NCBI_TaxID=438753;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 43989 / DSM 5975 / JCM 20966 / LMG 6465 / NBRC 14845 / NCIMB
RC 13405 / ORS 571;
RA Lee K.B., Backer P.D., Aono T., Liu C.T., Suzuki S., Suzuki T., Kaneko T.,
RA Yamada M., Tabata S., Kupfer D.M., Najar F.Z., Wiley G.B., Roe B.,
RA Binnewies T., Ussery D., Vereecke D., Gevers D., Holsters M., Oyaizu H.;
RT "Complete genome sequence of the nitrogen-fixing bacterium Azorhizobium
RT caulinodans ORS571.";
RL Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000255|HAMAP-Rule:MF_01321};
CC -!- SUBUNIT: The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta'
CC and 1 omega subunit. When a sigma factor is associated with the core
CC the holoenzyme is formed, which can initiate transcription.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
CC -!- SIMILARITY: Belongs to the RNA polymerase beta chain family.
CC {ECO:0000255|HAMAP-Rule:MF_01321}.
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DR EMBL; AP009384; BAF86885.1; -; Genomic_DNA.
DR RefSeq; WP_012169418.1; NC_009937.1.
DR AlphaFoldDB; A8HTY8; -.
DR SMR; A8HTY8; -.
DR STRING; 438753.AZC_0887; -.
DR PRIDE; A8HTY8; -.
DR EnsemblBacteria; BAF86885; BAF86885; AZC_0887.
DR KEGG; azc:AZC_0887; -.
DR eggNOG; COG0085; Bacteria.
DR HOGENOM; CLU_000524_4_3_5; -.
DR OMA; FMTWEGY; -.
DR OrthoDB; 9601at2; -.
DR Proteomes; UP000000270; Chromosome.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0032549; F:ribonucleoside binding; IEA:InterPro.
DR GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR CDD; cd00653; RNA_pol_B_RPB2; 1.
DR Gene3D; 2.30.150.10; -; 1.
DR Gene3D; 2.40.270.10; -; 1.
DR Gene3D; 2.40.50.150; -; 1.
DR Gene3D; 3.90.1110.10; -; 1.
DR HAMAP; MF_01321; RNApol_bact_RpoB; 1.
DR InterPro; IPR042107; DNA-dir_RNA_pol_bsu_ext_1_sf.
DR InterPro; IPR019462; DNA-dir_RNA_pol_bsu_external_1.
DR InterPro; IPR015712; DNA-dir_RNA_pol_su2.
DR InterPro; IPR007120; DNA-dir_RNAP_su2_dom.
DR InterPro; IPR037033; DNA-dir_RNAP_su2_hyb_sf.
DR InterPro; IPR010243; RNA_pol_bsu_bac.
DR InterPro; IPR007121; RNA_pol_bsu_CS.
DR InterPro; IPR007644; RNA_pol_bsu_protrusion.
DR InterPro; IPR007642; RNA_pol_Rpb2_2.
DR InterPro; IPR037034; RNA_pol_Rpb2_2_sf.
DR InterPro; IPR007645; RNA_pol_Rpb2_3.
DR InterPro; IPR007641; RNA_pol_Rpb2_7.
DR InterPro; IPR014724; RNA_pol_RPB2_OB-fold.
DR PANTHER; PTHR20856; PTHR20856; 1.
DR Pfam; PF04563; RNA_pol_Rpb2_1; 1.
DR Pfam; PF04561; RNA_pol_Rpb2_2; 2.
DR Pfam; PF04565; RNA_pol_Rpb2_3; 1.
DR Pfam; PF10385; RNA_pol_Rpb2_45; 1.
DR Pfam; PF00562; RNA_pol_Rpb2_6; 1.
DR Pfam; PF04560; RNA_pol_Rpb2_7; 1.
DR TIGRFAMs; TIGR02013; rpoB; 1.
DR PROSITE; PS01166; RNA_POL_BETA; 1.
PE 3: Inferred from homology;
KW DNA-directed RNA polymerase; Nucleotidyltransferase; Reference proteome;
KW Transcription; Transferase.
FT CHAIN 1..1376
FT /note="DNA-directed RNA polymerase subunit beta"
FT /id="PRO_0000329164"
FT REGION 1357..1376
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1376 AA; 153145 MW; 6F0DB9146C095872 CRC64;
MAQTFTGRKR IRKFFGKIKE VAEMPNLIEV QKASYDQFLQ IEEPKGGRAD DGLQAVFKSV
FPISDFSGAA MLEFVRYEFE PPKYDVDECR QRGMTFAAPL KVTLRLIVFD VDPDTGAKSV
KDIKEQDVYT GDIPLMTMNG TFIVNGTERV IVSQMHRSPG VFFDHDKGKT HSSGKLLFAA
RIIPYRGSWL DIEFDAKDIV YARIDRRRKI PVTSLLFALG LDSEEILNTF YEKILYTRAK
DGWRMPFDPK RMKGYKAVAD LIDADTGEVV VEAGKKLTVR AARQLVEKGL KALKISDDEM
VGQYIGEDIV NVHTGEIYAE AGEEITEKVL KTLGDAGFDE IPVLDIDHIN TGAYIRNTLS
ADKNSSREEA LFDIYRVMRP GEPPTLDSAQ AMFHSLFFDA ERYDLSAVGR VKMNMRLDLD
AEDTVRILRR EDILAVIKTL VELRDGKGEI DDIDHLGNRR VRSVGELMEN QYRVGLLRME
RAIKERMSSV DIDTVMPQDL INAKPVAAAV REFFGSSQLS QFMDQTNPLS EITHKRRLSA
LGPGGLTRER AGFEVRDVHP THYGRICPIE TPEGPNIGLI NSLATFARVN KYGFIEAPYR
RVVDGRVTDE VVYLSAMEEG KYYVAQANVP LDTDGRFQED LVICRHAGDV LVVSPDRVDF
MDVSPKQLVS VAAALIPFLE NDDANRALMG SNMQRQAVPL VRSQAPLVGT GMEAVVARDS
GAAIAARRAG VIDQVDATRI VIRATGETDP SKSGVDIYRL MKFQRSNQST CINQRPLVRV
GDVVKKGDII ADGPSTELGE LALGRNVLVA FMPWNGYNYE DSILLSENIV KEDVFTSIHI
EEFEAMARDT KLGPEEITRD IPNVSEEALK NLDEAGIVYI GAEVRAGDIL VGKITPKGES
PMTPEEKLLR AIFGEKAADV RDTSLRLPPG TTGTIVEVRV FNRHGVDKDE RALAIEREEI
ERLAKDRDDE QAILDRNVYG RLSEMLVGKV AIAGPKAFKK DTEITKDALG EYPRSQWWLF
AVADDALMSE LEAIRAQYDE SKKRLEQRFL DKVEKLQRGD ELPPGVMKMV KVFVAVKRKI
QPGDKMAGRH GNKGVVSRIV PVEDMPFLED GTNVDIVLNP LGVPSRMNVG QILETHLGWA
CAGLGRQVAA AVDAYYGSKD QQVLRNALVK VYGPDDIEVL DEKQITELGE NLRKGVPMAT
PVFDGAHEAD IEEHLEKAGL NPSGQSTLFD GRTGEPFDRK VTVGYIYMLK LHHLVDDKIH
ARSIGPYSLV TQQPLGGKAQ FGGQRFGEME VWALEAYGAA YTLQEMLTVK SDDVAGRTKV
YEAIVRGEDT FESGIPESFN VLVKEMRSLG LNVELLNSKT GRQTNPGTRE NLPAAE